RNA id: TU519321


Basic Information

Item Value
RNA id TU519321
length 239
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G452306
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4477095 ~ 4477333 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAACTGTAGTAAAAGTAACAAGTAATTGTCTGTGGACAATGTTCATGGTCTTTAAGGTCGAATATAACTATTTTATGATATAATATTACCAGTTTTATAGTTGTCATGTTACCAAACTGGTAAAATATTACATTTTTTCATAAAAAAACAAAACAAAAACAAATACATGAGCTACATTTCAGATGAATTCAATGTATTATTTGTAGTTCTACACAGAAAGTTAGTTGTCATTCTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519282 lncRNA upstream 24630 4449389 ~ 4452465 (+) True G452267
TU519315 lncRNA upstream 29062 4447789 ~ 4448033 (+) True G452300
TU519314 lncRNA upstream 30370 4446491 ~ 4446725 (+) True G452299
TU519313 lncRNA upstream 30898 4445963 ~ 4446197 (+) True G452298
TU519312 lncRNA upstream 31780 4444567 ~ 4445315 (+) True G452297
TU519277 lncRNA downstream 37978 4515311 ~ 4515695 (+) False CI01000319_04515268_04534770
TU519292 lncRNA downstream 39359 4516692 ~ 4518033 (+) True G452277
TU519324 lncRNA downstream 71274 4548607 ~ 4548821 (+) True G452309
TU519267 lncRNA downstream 83706 4561039 ~ 4561688 (+) True G452257
TU519265 lncRNA downstream 98039 4575372 ~ 4582676 (+) False G452256
CI01000319_04424107_04437627.mRNA mRNA upstream 39248 4423822 ~ 4437847 (+) True CI01000319_04424107_04437627
CI01000319_04002430_04030246.mRNA mRNA upstream 446732 4002430 ~ 4030363 (+) True CI01000319_04002430_04030246
CI01000319_03873107_03926475.mRNA mRNA upstream 550006 3871586 ~ 3927089 (+) True CI01000319_03873107_03926475
CI01000319_03839724_03847827.mRNA mRNA upstream 628172 3839682 ~ 3848923 (+) True CI01000319_03839724_03847827
CI01000319_03786208_03790365.mRNA mRNA upstream 686095 3786208 ~ 3791000 (+) True CI01000319_03786208_03790365
CI01000319_04478393_04509691.mRNA mRNA downstream 1060 4478393 ~ 4510337 (+) True CI01000319_04478393_04509691
CI01000319_04515268_04534770.mRNA mRNA downstream 37935 4515268 ~ 4534902 (+) False CI01000319_04515268_04534770
CI01000319_04536287_04545417.mRNA mRNA downstream 58954 4536287 ~ 4546868 (+) True CI01000319_04536287_04545417
CI01000319_04550077_04553516.mRNA mRNA downstream 71636 4548969 ~ 4555108 (+) True CI01000319_04550077_04553516
CI01000319_04581466_04584558.mRNA mRNA downstream 104133 4581466 ~ 4584565 (+) True CI01000319_04581466_04584558
TU519023 other upstream 932376 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1056495 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1073042 3403855 ~ 3404053 (+) True G452048
TU518579 other upstream 1142271 3333281 ~ 3334824 (+) True G451662
TU518612 other upstream 1247764 3216340 ~ 3229331 (+) True G451677
TU519272 other downstream 54286 4531619 ~ 4533094 (+) True G452260
TU519378 other downstream 309707 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519577 other downstream 862189 5339522 ~ 5346994 (+) False G452541
TU519588 other downstream 876361 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 882367 5359700 ~ 5371484 (+) True G452543

Expression Profile