RNA id: TU519324


Basic Information

Item Value
RNA id TU519324
length 215
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G452309
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4548607 ~ 4548821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAAAGTGACAGCAGCCTAATAAACTTGCTGCTGTCTGCGTCATTAATGTTAATCAAAGAACAAAAGACAAAGAGGAAATCACTCACTGCTCTTGACTGAATGACTTTTGTAGCTTTAATAAAGATTGATCTATATTCAATTTATTATTTATGCAACAAAAACTGTGCAGTGTTTTGTTATTCAATTTCTGTATATTTACCAGTTAGACCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519292 lncRNA upstream 30574 4516692 ~ 4518033 (+) True G452277
TU519277 lncRNA upstream 32912 4515311 ~ 4515695 (+) False CI01000319_04515268_04534770
TU519321 lncRNA upstream 71274 4477095 ~ 4477333 (+) True G452306
TU519282 lncRNA upstream 96142 4449389 ~ 4452465 (+) True G452267
TU519315 lncRNA upstream 100574 4447789 ~ 4448033 (+) True G452300
TU519267 lncRNA downstream 12218 4561039 ~ 4561688 (+) True G452257
TU519265 lncRNA downstream 26551 4575372 ~ 4582676 (+) False G452256
TU519266 lncRNA downstream 26551 4575372 ~ 4582098 (+) True G452256
TU519289 lncRNA downstream 46848 4595669 ~ 4601541 (+) True G452274
TU519274 lncRNA downstream 116299 4665120 ~ 4761324 (+) True G452261
CI01000319_04536287_04545417.mRNA mRNA upstream 1739 4536287 ~ 4546868 (+) True CI01000319_04536287_04545417
CI01000319_04515268_04534770.mRNA mRNA upstream 13705 4515268 ~ 4534902 (+) False CI01000319_04515268_04534770
CI01000319_04478393_04509691.mRNA mRNA upstream 38270 4478393 ~ 4510337 (+) True CI01000319_04478393_04509691
CI01000319_04424107_04437627.mRNA mRNA upstream 110760 4423822 ~ 4437847 (+) True CI01000319_04424107_04437627
CI01000319_04002430_04030246.mRNA mRNA upstream 518244 4002430 ~ 4030363 (+) True CI01000319_04002430_04030246
CI01000319_04550077_04553516.mRNA mRNA downstream 148 4548969 ~ 4555108 (+) True CI01000319_04550077_04553516
CI01000319_04581466_04584558.mRNA mRNA downstream 32645 4581466 ~ 4584565 (+) True CI01000319_04581466_04584558
CI01000319_04626091_04632375.mRNA mRNA downstream 76939 4625760 ~ 4632569 (+) True CI01000319_04626091_04632375
CI01000319_04697405_04706265.mRNA mRNA downstream 146342 4695163 ~ 4706544 (+) True CI01000319_04697405_04706265
CI01000319_04714806_04715176.mRNA mRNA downstream 165985 4714806 ~ 4715569 (+) True CI01000319_04714806_04715176
TU519272 other upstream 12582 4531619 ~ 4533094 (+) True G452260
TU519023 other upstream 1003888 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1128007 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1144554 3403855 ~ 3404053 (+) True G452048
TU518579 other upstream 1213783 3333281 ~ 3334824 (+) True G451662
TU519378 other downstream 238219 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519577 other downstream 790701 5339522 ~ 5346994 (+) False G452541
TU519588 other downstream 804873 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 810879 5359700 ~ 5371484 (+) True G452543
TU519805 other downstream 1159341 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284

Expression Profile