RNA id: TU519289


Basic Information

Item Value
RNA id TU519289
length 2180
lncRNA type read_through
GC content 0.39
exon number 3
gene id G452274
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4595669 ~ 4601541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTGATGTCAGCGTCTCTGATGCTTCTAAACATCTCTATCGATTATATCAAAATACATCTGACTAATCGGCTAAAATGAAAAACTAAAATACTTTCTGCTTAATATGCTCTCAGGTAAACAACAAAACATCAAATGAACGCCATGGACCTGTTTCATCGTTGAGACTGGCCGTGTTCAAGGTCATTATGAGCTCGCCCAGAGTCTCTTTATCGCCGTTCATTTTCCAGTTTCCCCCGACGAAGAATTTTCTTGAGGACATTATTGCGGGACAAACAAACCAAACGGACCAAACACACCGACTGCAGTATTATCGCTCCCGTAAGCGAACTTACGAATCCTACTATGGAAAAGCAGTTGTCGTAAATATTCAGGAGGCAGTCCTTTGGCATTGGAAGGTCGCAAGAAACGTCACGATAACCTAATTAATATGCATAAGCCAAAGCTTGGTCATGTCAGCTGTGCCCCATGGACATCAAGAATAGGAACTTTATTCAATTACTTGTCTTCTTGTTTGTGGGTGCTCGCTGACGTTTCTCTGGGAAAAGCTCTATTGAAAGTGGATTAGAGTAAGTCTCACGACCTCCTTCTTAAGTGGAAGAAAAAACAACTGCCTGATCTACTCTCTCAAGGGTCCAGCTCAGTTCCAAATCTTCAAGAAGCTGTCCCATGAGCCAGTGCAAACGCACATGCCATCTGGTGGTACTCCAGTGCAGCTCACCCTGTTGTCATGGCCAGACAACACACCTACAAGAGAGAACGGAAGAAAGGAAGGAAGTGAGAATATTCTTTGACATTCGACATTTTGTTCTTCATGAACATTTATTTTACGATGCAATGAAACGGAAGTAGCAACAGATCTTTTTTCCATATTGTGACATAAATCTGAGTAACAGATTATCGGAAAGATGGAGATGGAGATGTCGGCGCTGCACTCAAAAGTGGACGCAGACAAACATGAGCTTTCAGCATCGGGTTTAAGCGGAATAAATGATTGGAGAAGTCTGGCATATGTCATTTCACCGTCAGTCTGTCTTTTCACCGGAAGATCCAATTATGAGATTTTGATTTAAAACATATTAAACATATGCATGGATGAATTGTTCACAAAATCCATAACATGCATTTAGAACATAAAAAGGGGGAATTTTAATTTCGTGCCGACTTTAAGTAGAATACTTCCTCGACTTAAGGACCCAGTATTCTTCAAGCGCAATCGAAGAACGAACTAGTGTGTCAATTCAAACAAAATCAGGCCAAAATATTTGGAGTTCGAAACAGCTTGCCAAAGCGAAATTTCTGGAAAAGTTCACTCCGGCTGGTAAACATTTTTGATCTACTGTTGGTCTGTGGCGATTTCATAATATTAGGCGTTATAAAGTAAAATATATAGCTTCCGCCACACCACCTTCCGAATTTAACTCATCTCGTAGTTTAAACTGCTTACGCTACTTCTTACACCTTCAGTACTCAACTTACGGAAAAAAGCGTAAAAGCTTTCTTCGTAAGTTGAATACGGAAGGCAGTCTGGTGGAAGCTAGATATTTTACTTTATAATTTATTAAATATGGATATTTTTCTATGTTTTACACAAACACATTGCTTCGCTTCAGAAGGCCTTTATTAACCCACTGGAGCCATGTGGAGTACGTTTATGATGGATGGATGCACTTTCTTCAGCTCATACTCGTTGATCCCTGTTCACTGCCATTATAAAGCTCGGATGCGTCAGGATATTTATTAATATATCTCCGATTGTGTTCATCAGAAAGAAGAAAGTCATTTACACCTAGGATGTCTTGAGGGTGAGTAAATCTTTGGGGTAAGTTTTGAGCTTTTTTCTCACTACTGTCATTTTTGTTGTGTTTATTTGGTTACTGAGAGGAAAGTACAGCACATATTTCCAGATTCAAACATTGCTCTCAGCACTGTAGTTGACGCCAGGATGTTCGCTAACAGTATACCGCTGTATTTCAAACTTATTTTTTCCCCAAGGGAAAAATGAAATGTGACAATATCACATCCCTGCTAGAAAAGTATTCTCCTACTCATAAATTGCCTACATAGAAAATATCTGCTTATTATCCCATAATTTACTCACCCTCAAGCCATCTTCTTTCTGCCAAACGTAATCAGAGTTAAATTAAAAAATATTCTGGCTCTTTCAAGCTTTATAATGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519265 lncRNA upstream 12993 4575372 ~ 4582676 (+) False G452256
TU519266 lncRNA upstream 13571 4575372 ~ 4582098 (+) True G452256
TU519267 lncRNA upstream 33981 4561039 ~ 4561688 (+) True G452257
TU519324 lncRNA upstream 46848 4548607 ~ 4548821 (+) True G452309
TU519292 lncRNA upstream 77636 4516692 ~ 4518033 (+) True G452277
TU519274 lncRNA downstream 63579 4665120 ~ 4761324 (+) True G452261
TU519371 lncRNA downstream 176369 4777910 ~ 4778144 (+) True G452351
TU519412 lncRNA downstream 343412 4944953 ~ 4945452 (+) True G452390
TU519451 lncRNA downstream 457441 5058982 ~ 5059335 (+) True G452427
TU519487 lncRNA downstream 551185 5152726 ~ 5153054 (+) True G452458
CI01000319_04581466_04584558.mRNA mRNA upstream 11104 4581466 ~ 4584565 (+) True CI01000319_04581466_04584558
CI01000319_04550077_04553516.mRNA mRNA upstream 40561 4548969 ~ 4555108 (+) True CI01000319_04550077_04553516
CI01000319_04536287_04545417.mRNA mRNA upstream 48801 4536287 ~ 4546868 (+) True CI01000319_04536287_04545417
CI01000319_04515268_04534770.mRNA mRNA upstream 60767 4515268 ~ 4534902 (+) False CI01000319_04515268_04534770
CI01000319_04478393_04509691.mRNA mRNA upstream 85332 4478393 ~ 4510337 (+) True CI01000319_04478393_04509691
CI01000319_04626091_04632375.mRNA mRNA downstream 24219 4625760 ~ 4632569 (+) True CI01000319_04626091_04632375
CI01000319_04697405_04706265.mRNA mRNA downstream 93622 4695163 ~ 4706544 (+) True CI01000319_04697405_04706265
CI01000319_04714806_04715176.mRNA mRNA downstream 113265 4714806 ~ 4715569 (+) True CI01000319_04714806_04715176
CI01000319_04716980_04720666.mRNA mRNA downstream 114900 4716441 ~ 4720672 (+) True CI01000319_04716980_04720666
CI01000319_04741909_04748409.mRNA mRNA downstream 139439 4740980 ~ 4748943 (+) True CI01000319_04741909_04748409
TU519272 other upstream 59644 4531619 ~ 4533094 (+) True G452260
TU519023 other upstream 1050950 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1175069 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1191616 3403855 ~ 3404053 (+) True G452048
TU518579 other upstream 1260845 3333281 ~ 3334824 (+) True G451662
TU519378 other downstream 185499 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519577 other downstream 737981 5339522 ~ 5346994 (+) False G452541
TU519588 other downstream 752153 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 758159 5359700 ~ 5371484 (+) True G452543
TU519805 other downstream 1106621 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284

Expression Profile