RNA id: TU519625


Basic Information

Item Value
RNA id TU519625
length 212
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G452574
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5294318 ~ 5294529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATATCCGATACAGTACCTCTTTCGCGCACCACATATTTCTGGGCCGATCGATACCTCTGACTCCCTACAAGACAATAATCGCTCCTCTCCCCCCCTCCCCTGTATGGCTACCATTATTACCACCCTCCCCGGGGGAACGCACAAAACAGGGAGGGAGGCCGACGCTTCTACCCTTCCTCCATCCCTCTGTCCGTCCACCCCGACCCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519549 lncRNA upstream 82337 5211768 ~ 5211981 (+) True G452518
TU519535 lncRNA upstream 126036 5164179 ~ 5168282 (+) True G452504
TU519482 lncRNA upstream 134568 5157380 ~ 5159750 (+) False G452455
TU519641 lncRNA downstream 25516 5320045 ~ 5321004 (+) True G452590
TU519578 lncRNA downstream 41556 5336085 ~ 5343993 (+) False G452541
TU519580 lncRNA downstream 48981 5343510 ~ 5353023 (+) False G452541
TU519575 lncRNA downstream 49529 5344058 ~ 5346994 (+) True G452541
TU519649 lncRNA downstream 61559 5356088 ~ 5427852 (+) True G452597
CI01000319_05112104_05116909.mRNA mRNA upstream 177244 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_04949418_04952350.mRNA mRNA upstream 341968 4949305 ~ 4952350 (+) True CI01000319_04949418_04952350
CI01000319_04931863_04933044.mRNA mRNA upstream 361232 4931653 ~ 4933086 (+) True CI01000319_04931863_04933044
CI01000319_04907275_04915465.mRNA mRNA upstream 378722 4907006 ~ 4915596 (+) True CI01000319_04907275_04915465
CI01000319_04869169_04900787.mRNA mRNA upstream 393418 4869169 ~ 4900900 (+) True CI01000319_04869169_04900787
CI01000319_05435510_05450379.mRNA mRNA downstream 140700 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05618356_05625888.mRNA mRNA downstream 323827 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05651284_05669061.mRNA mRNA downstream 356585 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05684798_05685353.mRNA mRNA downstream 389887 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05704764_05712826.mRNA mRNA downstream 409554 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
TU519378 other upstream 503789 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 758293 4531619 ~ 4533094 (+) True G452260
TU519023 other upstream 1749599 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1873718 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1890265 3403855 ~ 3404053 (+) True G452048
TU519577 other downstream 44993 5339522 ~ 5346994 (+) False G452541
TU519588 other downstream 59165 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 65171 5359700 ~ 5371484 (+) True G452543
TU519805 other downstream 413633 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519967 other downstream 828115 6122644 ~ 6124939 (+) True G452884

Expression Profile