RNA id: TU519578



Basic Information


Item Value
RNA id TU519578
length 1875
lncRNA type antisense_over
GC content 0.46
exon number 9
gene id G452541
representative False

Chromosome Information


Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5336085 ~ 5353023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGGGGAGAGAGAGAGAGAGAGATTGGGGGGAGGGGGGTAGTGCAGGGTAAAAGGGGAGGGAGAAGAGGAGCAAGAGAGAAAGAGAGAGAGAGAGAAAGAGTGAGAGGGTGGCAGTGTGCTTTGTCATGTCTGAGAAAAAATGAAACCAAGCAGCTCTCAGACACTTCTAACATAAAAAATATCGAACAAAAAAGTTATGAATGATTAATAAAAACAACACTCAAAAAATAACAACGACATGGAAAGAAAAAACACTGAGAAAGGGAGGAGGTGGCAGGTAAGACGGCGGCTGTCTTCCTCTTTTTCCCCAGCAGAGGGCGAGAGTCTAAATGAATTTCATGATGATTAGGTTGTTTGTATTTGTTCGATGGCGAGGACGGAGAGGGATGTACAACAGTAATCTAGCGTGGCAGTGTTTGTACAGGAGTCCCTGTCGGCCGTGACGGAGTTTAAATGCAGCTGCTGGGTTTGGAAAGACGTGATGTGTGACATCCATTACAAAAGCTGTGCGTGTGCACATGCTAACAGTGTGTTTAACAGTATTAGTAAACCATACAACTATGATTCTGGCAGATTCAGCTGTAGTCTTTGGGCAGGAAAAAAACAGGTTTGTCATCTTCCTCTGTTGTTGGTCCTCTCGTCTCGTCTCATTTTTTTATTTTAGTAAAAGAAAGAAGATAGGACATGTAACACAGTTGTTTCTGTATTGGTTTTTTATAGTTTATAAGGAAGGAATGGGTAAAATGTGAAAAAGAGATAGAGAAAGAGATTAAGAAAGAGAGAGTGAGGGAATGAGGGAGAAATGATGAGTGAAATATTTGACAATTCAGTAGTATGTCTCCTTTTCAATCCAACCTCCTGGGTTTCGGCGCAGGATAAGTTTTCGGATCTCATCATAAACAAAAATTAAGAAGCTGTAAGGGAACGCACAGAACCACCAACTGGGCTTGAGAGGGTACATCCTGAGCGCCACATCCATGCCGGGGCAGTAAGACAGGAAGGCAGCGAGAGCCGTCTCCTCAAACAGGCCGAAGATCAAGATTTTATTCTTCATGCCCTGCTGGAACACAGAGTTGCGGCGAGTCTTGCAGATAATCACGTCGGCCCACTGCACCACCACAATACTGACGAAGAAGGCCGTGTGACAAGTGAACTCTACAATCTTCCTCTGCTCATAGGTCCATTGCTGTCCATAACTGTCCTCCAGGTCATTATTAGAGCGATCATCCCAGTTTAGCCGGATGCCCACCAGCAGGCTGGGAAGCCAGCCGTTCTCAGCCAGAATCACAAAATAACTGAAAAATCCTCCCAGGGCCTGAATCATACCGATCTGTCCATAGGCAATGCTGATGAGACGCTCGTTCACCAGCTTGTCCCTGTGGGGGTTACGAGGCTGGCGCTTCATGATGTCACTCTCTGCTGCTTCATAAGCCAATGAGATTGCAGGGACCATGTCAGTGCCCAGATCAATGCAGAGGATGGTGATGGTTCCGAGAGGAAGAGGAATGTTGACCAAGATGAAGAACAGGAAGGGAGTGATCTCAGGGATGTTGCTGGTCAGTGTATAGGCGATGGACTTCTTCAGGTTATCAAAGATGAGACGACCTTTCTCATATCCTTTGTCTCCCTCTCTCTCGTACCTTCCTCAACTCCAGTAACGATGGATGCAAAGTTGTCGTCCAGCAGGATCATGTCTGCAGCCTGCTTGGAGACGTCTGAGCCCGAGATCCCCATGGCAACACCGATGTCTGCCTTCTTTAGAGCGGGGGAGTCGTTCACTCCATCACCAGTCACGGCCACAATGGCACCCTAAAGGACACAGACAGACAGAAAGTGTGTGTAAAAAGTCAGTTTTTCCTTAGACATTGTAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU519641 lncRNA upstream 15081 5320045 ~ 5321004 (+) True G452590
TU519625 lncRNA upstream 41556 5294318 ~ 5294529 (+) True G452574
TU519549 lncRNA upstream 124104 5211768 ~ 5211981 (+) True G452518
TU519535 lncRNA upstream 167803 5164179 ~ 5168282 (+) True G452504
TU519481 lncRNA upstream 176335 5157681 ~ 5159750 (+) False G452455
TU519575 lncRNA downstream 65 5344058 ~ 5346994 (+) True G452541
TU519649 lncRNA downstream 12095 5356088 ~ 5427852 (+) True G452597
TU519717 lncRNA downstream 114338 5458331 ~ 5459625 (+) True G452658
TU519593 lncRNA downstream 155790 5499783 ~ 5503223 (+) True G452547
TU519740 lncRNA downstream 162535 5506528 ~ 5507227 (+) True G452681
CI01000319_05112104_05116909.mRNA mRNA upstream 219011 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_04949418_04952350.mRNA mRNA upstream 383735 4949305 ~ 4952350 (+) True CI01000319_04949418_04952350
CI01000319_04931863_04933044.mRNA mRNA upstream 402999 4931653 ~ 4933086 (+) True CI01000319_04931863_04933044
CI01000319_04907275_04915465.mRNA mRNA upstream 420489 4907006 ~ 4915596 (+) True CI01000319_04907275_04915465
CI01000319_04869169_04900787.mRNA mRNA upstream 435185 4869169 ~ 4900900 (+) True CI01000319_04869169_04900787
CI01000319_05435510_05450379.mRNA mRNA downstream 91236 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05618356_05625888.mRNA mRNA downstream 274363 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05651284_05669061.mRNA mRNA downstream 307121 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05684798_05685353.mRNA mRNA downstream 340423 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05704764_05712826.mRNA mRNA downstream 360090 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
TU519378 other upstream 545556 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 800060 4531619 ~ 4533094 (+) True G452260
TU519023 other upstream 1791366 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1915485 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1932032 3403855 ~ 3404053 (+) True G452048
TU519588 other downstream 9701 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 15707 5359700 ~ 5371484 (+) True G452543
TU519805 other downstream 364169 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519967 other downstream 778651 6122644 ~ 6124939 (+) True G452884

Expression Profile