Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU519575 |
| length | 2797 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 3 |
| gene id | G452541 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000319 |
| NCBI id | null |
| chromosome length | 6428943 |
| location | 5336085 ~ 5353023 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU519578 | lncRNA | upstream | 65 | 5336085 ~ 5343993 (+) | False | G452541 |
| TU519641 | lncRNA | upstream | 23054 | 5320045 ~ 5321004 (+) | True | G452590 |
| TU519625 | lncRNA | upstream | 49529 | 5294318 ~ 5294529 (+) | True | G452574 |
| TU519549 | lncRNA | upstream | 132077 | 5211768 ~ 5211981 (+) | True | G452518 |
| TU519535 | lncRNA | upstream | 175776 | 5164179 ~ 5168282 (+) | True | G452504 |
| TU519649 | lncRNA | downstream | 9094 | 5356088 ~ 5427852 (+) | True | G452597 |
| TU519717 | lncRNA | downstream | 111337 | 5458331 ~ 5459625 (+) | True | G452658 |
| TU519593 | lncRNA | downstream | 152789 | 5499783 ~ 5503223 (+) | True | G452547 |
| TU519740 | lncRNA | downstream | 159534 | 5506528 ~ 5507227 (+) | True | G452681 |
| TU519747 | lncRNA | downstream | 165799 | 5512793 ~ 5513079 (+) | True | G452685 |
| CI01000319_05112104_05116909.mRNA | mRNA | upstream | 226984 | 5111633 ~ 5117074 (+) | True | CI01000319_05112104_05116909 |
| CI01000319_04949418_04952350.mRNA | mRNA | upstream | 391708 | 4949305 ~ 4952350 (+) | True | CI01000319_04949418_04952350 |
| CI01000319_04931863_04933044.mRNA | mRNA | upstream | 410972 | 4931653 ~ 4933086 (+) | True | CI01000319_04931863_04933044 |
| CI01000319_04907275_04915465.mRNA | mRNA | upstream | 428462 | 4907006 ~ 4915596 (+) | True | CI01000319_04907275_04915465 |
| CI01000319_04869169_04900787.mRNA | mRNA | upstream | 443158 | 4869169 ~ 4900900 (+) | True | CI01000319_04869169_04900787 |
| CI01000319_05435510_05450379.mRNA | mRNA | downstream | 88235 | 5435229 ~ 5450632 (+) | True | CI01000319_05435510_05450379 |
| CI01000319_05618356_05625888.mRNA | mRNA | downstream | 271362 | 5618356 ~ 5626767 (+) | True | CI01000319_05618356_05625888 |
| CI01000319_05651284_05669061.mRNA | mRNA | downstream | 304120 | 5651114 ~ 5671460 (+) | True | CI01000319_05651284_05669061 |
| CI01000319_05684798_05685353.mRNA | mRNA | downstream | 337422 | 5684416 ~ 5685353 (+) | True | CI01000319_05684798_05685353 |
| CI01000319_05704764_05712826.mRNA | mRNA | downstream | 357089 | 5704083 ~ 5713091 (+) | False | CI01000319_05704764_05712826 |
| TU519378 | other | upstream | 553529 | 4787040 ~ 4790529 (+) | True | CI01000319_04787066_04788609 |
| TU519272 | other | upstream | 808033 | 4531619 ~ 4533094 (+) | True | G452260 |
| TU519023 | other | upstream | 1799339 | 3500279 ~ 3500512 (+) | True | G452043 |
| TU519020 | other | upstream | 1923458 | 3414181 ~ 3420600 (+) | True | G452040 |
| TU519028 | other | upstream | 1940005 | 3403855 ~ 3404053 (+) | True | G452048 |
| TU519588 | other | downstream | 6700 | 5353694 ~ 5356035 (+) | True | G452545 |
| TU519585 | other | downstream | 12706 | 5359700 ~ 5371484 (+) | True | G452543 |
| TU519805 | other | downstream | 361168 | 5720311 ~ 5732936 (+) | False | CI01000319_05718732_05734284 |
| TU519967 | other | downstream | 775650 | 6122644 ~ 6124939 (+) | True | G452884 |
