RNA id: TU519588


Basic Information

Item Value
RNA id TU519588
length 467
RNA type TUCP
GC content 0.55
exon number 2
gene id G452545
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5353694 ~ 5356035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACCCTCGGGCACGTTGGCGACGATGATTCCGATGAGGAAGATGACGGCCTCCAACCAGGAGTAGCCCAGGATGATTGACAGGATAAAGAAGCTCACGCCCAGGAAGACAGCCACGCCGGTGATAATTTGGATGAAGTGCTCGATCTCCTTGGCGATGGGTGTCTTTCCGGTCTCCAGGCCGGAGGTCAGAGTAGCAATACGGCCCATGACAGTGCGGTCACCGGTGCAAACGACAATACCACGAGCAGTACCTGCACAGTTGGTGGAGAAGAAGGCGATGTTACGGGTTTCCAGAGGGTTATCATGGGTGCAGTCAGGTGACCTGGTCTGGGGCTCTGATTCACCGGTCAGGGAGGAGTTGTCAACCTGAAGAATTATAATATATATTCATTTAGGGTGTACTCACACTAGGCACGGTTGCCTTGTACCGTACCCTGGCGTGTTTGTCCCCCCTCCCCATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519580 lncRNA upstream 671 5343510 ~ 5353023 (+) False G452541
TU519575 lncRNA upstream 6700 5344058 ~ 5346994 (+) True G452541
TU519578 lncRNA upstream 9701 5336085 ~ 5343993 (+) False G452541
TU519641 lncRNA upstream 32690 5320045 ~ 5321004 (+) True G452590
TU519625 lncRNA upstream 59165 5294318 ~ 5294529 (+) True G452574
TU519649 lncRNA downstream 53 5356088 ~ 5427852 (+) True G452597
TU519717 lncRNA downstream 102296 5458331 ~ 5459625 (+) True G452658
TU519593 lncRNA downstream 143748 5499783 ~ 5503223 (+) True G452547
TU519740 lncRNA downstream 150493 5506528 ~ 5507227 (+) True G452681
TU519747 lncRNA downstream 156758 5512793 ~ 5513079 (+) True G452685
CI01000319_05112104_05116909.mRNA mRNA upstream 236620 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_04949418_04952350.mRNA mRNA upstream 401344 4949305 ~ 4952350 (+) True CI01000319_04949418_04952350
CI01000319_04931863_04933044.mRNA mRNA upstream 420608 4931653 ~ 4933086 (+) True CI01000319_04931863_04933044
CI01000319_04907275_04915465.mRNA mRNA upstream 438098 4907006 ~ 4915596 (+) True CI01000319_04907275_04915465
CI01000319_04869169_04900787.mRNA mRNA upstream 452794 4869169 ~ 4900900 (+) True CI01000319_04869169_04900787
CI01000319_05435510_05450379.mRNA mRNA downstream 79194 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05618356_05625888.mRNA mRNA downstream 262321 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05651284_05669061.mRNA mRNA downstream 295079 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05684798_05685353.mRNA mRNA downstream 328381 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05704764_05712826.mRNA mRNA downstream 348048 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
TU519577 other upstream 6700 5339522 ~ 5346994 (+) False G452541
TU519378 other upstream 563165 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 817669 4531619 ~ 4533094 (+) True G452260
TU519023 other upstream 1808975 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1933094 3414181 ~ 3420600 (+) True G452040
TU519585 other downstream 3665 5359700 ~ 5371484 (+) True G452543
TU519805 other downstream 352127 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519967 other downstream 766609 6122644 ~ 6124939 (+) True G452884

Expression Profile