RNA id: TU519593


Basic Information

Item Value
RNA id TU519593
length 594
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G452547
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5499783 ~ 5503223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCAGCTTCAAGTCGAAGGATTTTGGCTCGCTCTGCGTCCTCTGGGTTACCAGGCAGGTGATTTCTTTTCCGTTTTCAGCAGGTGTCGGGATCATCCGATACTCGCTCTTTACGGTCACTGTGCCGTCCACTTCGGGCACTGAAGTGTGGTTATAGCGGCCAGCAACAGTTGTAATCCAGGAGATTGTTGCCTCTGGTTTTCCTTGGGCTGCTTCACAACTTGCCACGACAACTTCAGAAGGGCCGGCTTGGACTGGGATGGCGGTAGCTGAGTTTTTGGGTTTAGCCAGCATGATAAGAGTGGTCGTTCCTTGCTCGTTTCCACTGGGGTAAGTTGCGTACTCGCAGATGTACCTGCCAGCATCAGCCATCTTCAGTTTGTCGATCCTAATGGATGGGTTCTCCAGGGAGCCCCTTGTGAAATTAACTCTGCCTTCAAACTCTTTATTAGGGAAACTGGCTCCATATGAGGGATGGAATACAGCAATGTTGTGCCTATCACCCTCAACACGCTCAAACATCCACGAAACCTACGAACCAGAAGAAATAGGGAATTAATTCTTGCACGGCATTGCTTTAACATACTGCATGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519717 lncRNA upstream 40158 5458331 ~ 5459625 (+) True G452658
TU519649 lncRNA upstream 71931 5356088 ~ 5427852 (+) True G452597
TU519580 lncRNA upstream 146760 5343510 ~ 5353023 (+) False G452541
TU519575 lncRNA upstream 152789 5344058 ~ 5346994 (+) True G452541
TU519578 lncRNA upstream 155790 5336085 ~ 5343993 (+) False G452541
TU519740 lncRNA downstream 3305 5506528 ~ 5507227 (+) True G452681
TU519747 lncRNA downstream 9570 5512793 ~ 5513079 (+) True G452685
TU519755 lncRNA downstream 22209 5525432 ~ 5525655 (+) True G452693
TU519756 lncRNA downstream 22449 5525672 ~ 5525941 (+) True G452694
TU519757 lncRNA downstream 22782 5526005 ~ 5526215 (+) True G452695
CI01000319_05435510_05450379.mRNA mRNA upstream 49151 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05112104_05116909.mRNA mRNA upstream 382709 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_04949418_04952350.mRNA mRNA upstream 547433 4949305 ~ 4952350 (+) True CI01000319_04949418_04952350
CI01000319_04931863_04933044.mRNA mRNA upstream 566697 4931653 ~ 4933086 (+) True CI01000319_04931863_04933044
CI01000319_04907275_04915465.mRNA mRNA upstream 584187 4907006 ~ 4915596 (+) True CI01000319_04907275_04915465
CI01000319_05618356_05625888.mRNA mRNA downstream 115133 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05651284_05669061.mRNA mRNA downstream 147891 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05684798_05685353.mRNA mRNA downstream 181193 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05704764_05712826.mRNA mRNA downstream 200860 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
CI01000319_05718732_05734284.mRNA mRNA downstream 215109 5718332 ~ 5734843 (+) False CI01000319_05718732_05734284
TU519585 other upstream 128299 5359700 ~ 5371484 (+) True G452543
TU519588 other upstream 143748 5353694 ~ 5356035 (+) True G452545
TU519577 other upstream 152789 5339522 ~ 5346994 (+) False G452541
TU519378 other upstream 709254 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 963758 4531619 ~ 4533094 (+) True G452260
TU519805 other downstream 204939 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519967 other downstream 619421 6122644 ~ 6124939 (+) True G452884

Expression Profile