RNA id: TU519777



Basic Information


Item Value
RNA id TU519777
length 381
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G452711
representative True

Chromosome Information


Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5540455 ~ 5540835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATAAGGCAGTCGTGTGTTTATTAATCATGTCTAATCAAATTTTCTGTTTATTCAGCTACAGCAATATGACACCTGTTATCTTCTTCTGTGGCAGGGCATATTTGCAGTTTCTGCACGAGAGCGCCCTCTGGCTTCCAGATGGAGAAGCATTTGCTACTGATCAGAGCCGTACAGCTCTGACAAGCTGTGCATAAAATAATCGCAGCCTTTGCCAAATCGCGTACTGTTTAATCATGATAAATCGTGCAGCCCTAACGGACAGAACGACAGACAGAACGACAGAATGACAGACAGACAGAACAACAACAGAGAGAACCACAGAATGAGACAGACAGATAGAATGACAGACAGGACAGAAAGAACGACAGAGAGAATGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU519776 lncRNA upstream 213 5540023 ~ 5540242 (+) True G452710
TU519775 lncRNA upstream 743 5539370 ~ 5539712 (+) True G452709
TU519774 lncRNA upstream 1553 5538265 ~ 5538902 (+) True G452708
TU519773 lncRNA upstream 2232 5537879 ~ 5538223 (+) True G452707
TU519772 lncRNA upstream 2715 5537504 ~ 5537740 (+) True G452706
TU519778 lncRNA downstream 632 5541467 ~ 5541674 (+) True G452712
TU519752 lncRNA downstream 20935 5561770 ~ 5562044 (+) True G452690
TU519879 lncRNA downstream 41516 5582351 ~ 5582561 (+) True G452804
TU519880 lncRNA downstream 45951 5586786 ~ 5588895 (+) True G452805
TU519768 lncRNA downstream 52569 5593404 ~ 5654938 (+) False G452705
CI01000319_05435510_05450379.mRNA mRNA upstream 89823 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05112104_05116909.mRNA mRNA upstream 423381 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_04949418_04952350.mRNA mRNA upstream 588105 4949305 ~ 4952350 (+) True CI01000319_04949418_04952350
CI01000319_04931863_04933044.mRNA mRNA upstream 607369 4931653 ~ 4933086 (+) True CI01000319_04931863_04933044
CI01000319_04907275_04915465.mRNA mRNA upstream 624859 4907006 ~ 4915596 (+) True CI01000319_04907275_04915465
CI01000319_05618356_05625888.mRNA mRNA downstream 77521 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05651284_05669061.mRNA mRNA downstream 110279 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05684798_05685353.mRNA mRNA downstream 143581 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05704764_05712826.mRNA mRNA downstream 163248 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
CI01000319_05718732_05734284.mRNA mRNA downstream 177497 5718332 ~ 5734843 (+) False CI01000319_05718732_05734284
TU519585 other upstream 168971 5359700 ~ 5371484 (+) True G452543
TU519588 other upstream 184420 5353694 ~ 5356035 (+) True G452545
TU519577 other upstream 193461 5339522 ~ 5346994 (+) False G452541
TU519378 other upstream 749926 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 1004430 4531619 ~ 4533094 (+) True G452260
TU519805 other downstream 167327 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519967 other downstream 581809 6122644 ~ 6124939 (+) True G452884

Expression Profile