RNA id: TU519901



Basic Information


Item Value
RNA id TU519901
length 467
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G452821
representative True

Chromosome Information


Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5749840 ~ 5750457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTATTCTACAACAAATACAAATGATTTTATGACAGACTACTGTTTGAGCATGCTCATACAAAAAGAAACACAAAATGTATATTTTTGGCCTTTTTAATGACTGATTAACGTAATAATCAATGTTAACAGTGCAAAATTCATAAGAATACACACAAGTGAAAACAACAACAGGTAAAGATGCTGACACTTATGTCAAGCGCTGTAGAACAGGCAGTTTGTTGCCAGGAATCAGTTGCCTCTCTGCACCCTTCTCCGTCACAATGGCAAGATGCACAACGCCGCCACTCACATTGTCCCTGTCCATAGCTAATGAAAGGGCATTAGTTGTGAAAGTGAGACACTCTTCTTTGGTCATTCCAGGCTTGAATTTGGCATCTGCATCTCCATAGATAAAGTTGCTACCAGACCCACCAATAGTAAACTCTTGCTCCACAATCATGCCTCCAAGAGACACTGTGAACACCT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU519900 lncRNA upstream 10366 5739093 ~ 5739474 (+) True G452820
TU519804 lncRNA upstream 16904 5732740 ~ 5732936 (+) True CI01000319_05718732_05734284
TU519802 lncRNA upstream 35955 5712686 ~ 5712732 (+) True G452735
TU519844 lncRNA upstream 71815 5675428 ~ 5678025 (+) True G452769
TU519770 lncRNA upstream 135971 5593404 ~ 5613869 (+) True G452705
TU519821 lncRNA downstream 1261 5751718 ~ 5752959 (+) True G452748
TU519905 lncRNA downstream 104498 5854955 ~ 5855198 (+) True G452825
TU519906 lncRNA downstream 105948 5856405 ~ 5856609 (+) True G452826
TU519873 lncRNA downstream 197084 5947541 ~ 5951211 (+) True G452798
TU519859 lncRNA downstream 216433 5966890 ~ 5967329 (+) True G452784
CI01000319_05742834_05745945.mRNA mRNA upstream 3699 5741331 ~ 5746141 (+) True CI01000319_05742834_05745945
CI01000319_05718732_05734284.mRNA mRNA upstream 14997 5718332 ~ 5734843 (+) False CI01000319_05718732_05734284
CI01000319_05704764_05712826.mRNA mRNA upstream 36749 5704083 ~ 5713091 (+) False CI01000319_05704764_05712826
CI01000319_05684798_05685353.mRNA mRNA upstream 64487 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05651284_05669061.mRNA mRNA upstream 78380 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05796587_05803719.mRNA mRNA downstream 43231 5793688 ~ 5804150 (+) False CI01000319_05796587_05803719
CI01000319_05812788_05816097.mRNA mRNA downstream 62236 5812693 ~ 5816171 (+) True CI01000319_05812788_05816097
CI01000319_05816948_05819499.mRNA mRNA downstream 66368 5816825 ~ 5819499 (+) True CI01000319_05816948_05819499
CI01000319_05828294_05834113.mRNA mRNA downstream 77550 5828007 ~ 5835085 (+) True CI01000319_05828294_05834113
CI01000319_05872448_05880610.mRNA mRNA downstream 121493 5871950 ~ 5880610 (+) True CI01000319_05872448_05880610
TU519805 other upstream 16904 5720311 ~ 5732936 (+) False CI01000319_05718732_05734284
TU519585 other upstream 378356 5359700 ~ 5371484 (+) True G452543
TU519588 other upstream 393805 5353694 ~ 5356035 (+) True G452545
TU519577 other upstream 402846 5339522 ~ 5346994 (+) False G452541
TU519378 other upstream 959311 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519967 other downstream 372187 6122644 ~ 6124939 (+) True G452884

Expression Profile