Item | Value |
---|---|
RNA id | TU519901 |
length | 467 |
lncRNA type | antisense_over |
GC content | 0.40 |
exon number | 2 |
gene id | G452821 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000319 |
NCBI id | null |
chromosome length | 6428943 |
location | 5749840 ~ 5750457 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU519900 | lncRNA | upstream | 10366 | 5739093 ~ 5739474 (+) | True | G452820 |
TU519804 | lncRNA | upstream | 16904 | 5732740 ~ 5732936 (+) | True | CI01000319_05718732_05734284 |
TU519802 | lncRNA | upstream | 35955 | 5712686 ~ 5712732 (+) | True | G452735 |
TU519844 | lncRNA | upstream | 71815 | 5675428 ~ 5678025 (+) | True | G452769 |
TU519770 | lncRNA | upstream | 135971 | 5593404 ~ 5613869 (+) | True | G452705 |
TU519821 | lncRNA | downstream | 1261 | 5751718 ~ 5752959 (+) | True | G452748 |
TU519905 | lncRNA | downstream | 104498 | 5854955 ~ 5855198 (+) | True | G452825 |
TU519906 | lncRNA | downstream | 105948 | 5856405 ~ 5856609 (+) | True | G452826 |
TU519873 | lncRNA | downstream | 197084 | 5947541 ~ 5951211 (+) | True | G452798 |
TU519859 | lncRNA | downstream | 216433 | 5966890 ~ 5967329 (+) | True | G452784 |
CI01000319_05742834_05745945.mRNA | mRNA | upstream | 3699 | 5741331 ~ 5746141 (+) | True | CI01000319_05742834_05745945 |
CI01000319_05718732_05734284.mRNA | mRNA | upstream | 14997 | 5718332 ~ 5734843 (+) | False | CI01000319_05718732_05734284 |
CI01000319_05704764_05712826.mRNA | mRNA | upstream | 36749 | 5704083 ~ 5713091 (+) | False | CI01000319_05704764_05712826 |
CI01000319_05684798_05685353.mRNA | mRNA | upstream | 64487 | 5684416 ~ 5685353 (+) | True | CI01000319_05684798_05685353 |
CI01000319_05651284_05669061.mRNA | mRNA | upstream | 78380 | 5651114 ~ 5671460 (+) | True | CI01000319_05651284_05669061 |
CI01000319_05796587_05803719.mRNA | mRNA | downstream | 43231 | 5793688 ~ 5804150 (+) | False | CI01000319_05796587_05803719 |
CI01000319_05812788_05816097.mRNA | mRNA | downstream | 62236 | 5812693 ~ 5816171 (+) | True | CI01000319_05812788_05816097 |
CI01000319_05816948_05819499.mRNA | mRNA | downstream | 66368 | 5816825 ~ 5819499 (+) | True | CI01000319_05816948_05819499 |
CI01000319_05828294_05834113.mRNA | mRNA | downstream | 77550 | 5828007 ~ 5835085 (+) | True | CI01000319_05828294_05834113 |
CI01000319_05872448_05880610.mRNA | mRNA | downstream | 121493 | 5871950 ~ 5880610 (+) | True | CI01000319_05872448_05880610 |
TU519805 | other | upstream | 16904 | 5720311 ~ 5732936 (+) | False | CI01000319_05718732_05734284 |
TU519585 | other | upstream | 378356 | 5359700 ~ 5371484 (+) | True | G452543 |
TU519588 | other | upstream | 393805 | 5353694 ~ 5356035 (+) | True | G452545 |
TU519577 | other | upstream | 402846 | 5339522 ~ 5346994 (+) | False | G452541 |
TU519378 | other | upstream | 959311 | 4787040 ~ 4790529 (+) | True | CI01000319_04787066_04788609 |
TU519967 | other | downstream | 372187 | 6122644 ~ 6124939 (+) | True | G452884 |