RNA id: TCONS_00021736


Basic Information

Item Value
RNA id TCONS_00021736
length 1745
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_010105
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36282260 ~ 36357102 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAATAGTTTCACCACGGACACGAAGAGTACGAATCAAACAGCGACAGTCCACTGTCAAAATACATCACCGCGgtcacaggcattaataaacGAGCCAGAGTCATCGATCACAACAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAACCCGCCGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGAGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTCCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTGTGAGATTCAGTGGATGACTGTATGTGTAGAAGAATctaatgtgtttttttctctaaTACAAATTGTTCCTACACTAATGAGAAAATATTTGTAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGGGGCAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAAGTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggttaactggtcagattacaattaattttatattaaacaaattgacgtgtctattttgtgtctgacacattaaataatgcattttaaaatactaatttatttttatatgctagcacagtggttctcaaactgtggtacgtgtaccactagtggtacgcaggcttccttctagtggtacgcggatgaatcaaatatgtaatatgtacatgctacatatatttaaagaaattatcaaaaatgatttatatacgaatatgatgacataaagcctatatttatgaggtctaggcaacatttccaggtgctaACAAACCAGgagttatttcttttttaaactgtacagagcttaaGCTGCTTTACTAGACctaatacgctactgtatttcaaaactgctcattatggtggtacttgcaaagacaatttttttccgaggtggtacttgatgaaaaatgtttgagaaccactgtgctagcatattaataatagaacaaaacaacagagcatctttacGCActtgcagtgtttagcacagaagaacagaataagagaagaactaaataaaatgaataaaataaataggactgccctaaattattttcacttcaataattaatttatattacaaaacgaaaatactgactgattctttttaataaccggcataggctgtttttttttcgccaatcatgttttttttttcttctgtcaaataaaatcGCAGACTTTCTCAAATCGCcagctccacggaaaatatgcatttatttaatgccccgctgtcattattataatcacaaaacctttttacattttaatagaaatcattattttaaagaatatgtcctgatatggtttcctctctctctctctggcggttcaagtgcgcgcgctgcgtgatgaaaagacaacaacacgcgcgcataggttgactttttgtaaacag

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006310 DNA recombination biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0070765 gamma-secretase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003714 transcription corepressor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021731 lncRNA upstream 64256 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00021985 lncRNA upstream 243866 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020063 lncRNA upstream 355100 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021730 lncRNA upstream 465199 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00021729 lncRNA upstream 501421 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021987 lncRNA downstream 190925 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021986 lncRNA downstream 190925 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021988 lncRNA downstream 190939 36548041 ~ 36557880 (+) True XLOC_010107
TCONS_00021989 lncRNA downstream 203590 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00021990 lncRNA downstream 221898 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00020067 mRNA upstream 118752 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 118752 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 344551 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 348982 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 348994 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020069 mRNA downstream 293882 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 313962 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 391436 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 411572 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 411572 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020056 other upstream 556128 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 876373 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1001472 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1557578 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2525881 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 225384 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 391504 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1414381 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1663917 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1938899 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

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