RNA id: TCONS_00021995


Basic Information

Item Value
RNA id TCONS_00021995
length 2947
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_010114
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36955088 ~ 36958828 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATCTACTGCATTACACACATCTCAAAAATCCCTGAGGACAAAGCAAAATCACAGAACAATTATTCTACCTCAATAGAATTGTTGTCATGACTCAAGAAATTAGAAACTGTTCTTGGCTTAAAAATTATGGCAGTGTTTTATTAGTTGTCATAATTAAGATTAAAGAACTATTTTTAAAGAATGGTTAATATTGTAAAGGAAGTatagtacatactgtatattatcAGTGGTTAAAATCTtgcaatacaaatatttattgcCTTATGATGTCATTAATAGAAGATTGCTGACAGTGGAAGCAATGTGCTAAATGCACCAGACATTATGTGAAACAATTTTGGATTTCAATTTTACCACCACATGACAGTACTAAACATCTGTTTTAAATCTAGGTTTCCATAGTTTCCAAGTTTTCGATAGTTCATGCATGAAAGAACATCAGAAAGTAATTCATAAATGTGTGATTCTTGCGACTGCAATTGCTCTATGGCAGCTACACCTCTGGGCTCAGTGGGTCTCCTTGTGCGGCTCCACCTCTGGGCCCAGTAGGTCTCCTGGTGTAGCTCCACCAGTGAGTCCAAGCCAAGAActgaaacatattttttaaatctgaCAATAAATGTGCCACAGCCAGATCTTTTGAGGCACAACTAGACTTTCTTTTCTGGCTACATGTGTGGTTTTTTGCAGTCATGGCTTTCTCTTTTAATCAGGGAAGGAAAAAGAAAAGTGTTTTCACCGTGATCTTTATTGAATGTTTTTAACTCTTTGAAAAATTGTGCCGTTGgcataaaatatttctaaaaatccATATTGGTGGTGAGTTTCCCTTTCAGAAACAGTAAGAGCTGGCCATATCTAGAACCACTGAAGtttgaataaaactttttttttttagcctagAATGAAAAAATGTTAAGCCaagaattaaaaatgttttctatCTCAGAATAAATCTGACcagtttttttcagtagtcttaagttatgattaaattagagttaaaaaacttttttttaaattatttattttgtgatgttACTATTGTAAGTACATACAGAAGCTGTGATCTTACAATCTTCTATTCCTTAAAGCAGTTCCACAATGACATCATTCATTgcctgacagtgtgtgtgtgtgcgtgtgtgtgtgtatgcgcatgtgtgcgcgcgtgtgtgtgtgtgtgtgtctgtgtgtgtatgcgcatgtctgcgcgtgtgtgtgtaggtgtgtatgtgtgtaaatgtgtgtacgtgtgcgtgcatgcgtgctaGTTAGGAATGGACAGAGACTTTTTGTTGCTACTTGCAATTTGTGTTTCTCTGAATGTACTGGATTTACTGAATACagttagaaaaataataatattcacacGTACTGATCACTAAATTTGTCCATTATGGATAAACAGTTTGAAAATTACTGAACACTTTTGTCTGAAAGTTATATTTGTACCTGTATAATATTAAattcctgaaataaaataagGATGATGATTGTTGTTtatgatatatattatattttaacatatatatttttaactgagTTCATATAATTAGAAAAACATTTCATTACAAAACCCCATAAAATTCCATATTATCAGCTgagactcactcactcactatcctttggcttagtctttgatttatcaggtgttgccactgcagaatgaactgccCATTACTCAGCTGTAACTTAAGTCTTCTATAATTCATGCATGAAAGTTAAAGAATACCAGATAGTAATTcagaaaaatgtgtttaatgacCTTGACTCTTGCGCCTTTTTTTCTTCCTGTACTGTGTGTGCAACTACAATAGCTCTACATGCAGCTACACTACTAGCTACACTAGTGGGTCTCTCggtgcagctccacctctgggCTCAGTGAGTCTTGGGGTGCAGCTCCACTTCTGGGCTCAGTGCGTCTCCTGATGCAGCTCCACCAGTAAACCCGacaagattttaaaatataaatctgaaaataaaaaaagaacgcTTCGTTTTTTTGAGGCACACTTAGACTCTTTTTTTCTGGCTATACTAGTCATTTTTACAATTATAATAGAAACTATTTTTTTAGTGTATTATATGTGGTTCACTATTATAATGAGTGGAGGAAAAAGAAAACCTTGAATTGAAATCAATTACTGTGATCTTCAGTGACTTTTTGAAATCCTTTAAGATGTGGCACTGACAAATAAGATTTCTAAAAATCCATATTTTTGAAACTGAAAAGGCTGGACATATCTAGAACAACTAAAGTTTGAATAAAAGACAGACAGAATTCCAAACCAAGTATTGAAAATATTTCCTTATCcaaatattaattttagtttattttttattttttgatagtgTTGAGTTGGGGGTTAAAATGATTTGAAGAGAATGGTTTCTTTTGTGATGttaatatagtgtgtgtgtatattagctGTGATTACAATCTCGCATTTCAAAAATGTGTTCCATGATGACATCATTAATAGAAGATGGCAGACAATGACAGCCATGCTAAATGTCCAGCTCTGGGCTCAGTGAGTCTCCTAGTGCAGCTCCAGCTCTGGGCTCAGTAAGCCTCCTAGTGCAGCTCCACCTCTGTGTTCAGaggtctcctggtgcagctccacctctgggCTTAGTAGgcctcctggtgcagctccacctctgTGCTCAGTGGGTCTCCTGGTGCAACTCCACCTCTGGGCTCAGTGGGTCTTCTGGTGTAGCTCCATCAGTGAGCCCAAGTCaagaatttaaaacatttgtaaattatTTGCAATAAATGTTGCACAGACAGTTTTCTGAAGCACCATTAGACAtcattttcttgttttgctaGTGATTTTTGCTACTATAATGTATAAAATGTCTGGGGTAGTATGAGTAATTCACTATTATAATCAATTGAGTAAAAAGAAAACCTGATATTAAAAGAGGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021994 lncRNA upstream 165405 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00020073 lncRNA upstream 195012 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021990 lncRNA upstream 341237 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00020081 lncRNA downstream 624123 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021996 lncRNA downstream 674619 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021997 lncRNA downstream 700692 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021738 lncRNA downstream 754436 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00020095 lncRNA downstream 1281217 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00020076 mRNA upstream 23260 36906693 ~ 36931828 (+) True XLOC_010113
TCONS_00020075 mRNA upstream 23357 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA upstream 23357 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020071 mRNA upstream 194932 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020070 mRNA upstream 235383 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020079 mRNA downstream 511889 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020078 mRNA downstream 511889 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020077 mRNA downstream 511889 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020080 mRNA downstream 624044 37582872 ~ 37628496 (+) False XLOC_010115
TCONS_00020083 mRNA downstream 917951 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020072 other upstream 205764 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 370303 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 1228956 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1549201 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1674300 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020082 other downstream 812655 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1062191 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1337173 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1391895 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 1435585 38394413 ~ 38396795 (+) True XLOC_010132

Expression Profile

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