RNA id: CI01000321_00098493_00100489.mRNA


Basic Information

Item Value
RNA id CI01000321_00098493_00100489.mRNA
length 1782
RNA type mRNA
GC content 0.52
exon number 2
gene id CI01000321_00098493_00100489
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 98296 ~ 100586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTAAATTGACTGTGCGCTACGGTGCAAAGACATTGCCCTCATTTATCTTCCAAGTGGCCTGCAAAGGAGCAAATTTAATGGGACTGGACTTGTTCACCGTGCTGGGGTTCGCCCGCTGCTATCCTGGCTGTGACCGCAATATGGCAGCAACAGCGGCCAACGCTGTTTGATGGGCTGGGCTGCCTCACCTCATTCATGCACCAGCCTCTCATTGACCATACTGTCAGCCCTGTCATTCAGCCACTACGCCGTATTCCCCTGGCCCTGCGGGAGGGGGTGTCAACGGAACTACAGCGCCTGCTGCGAGCAGGCATCATTGAGCATGTGGATGCGTTGCCCTGGGTCTCAAACCTGGTGGTGGCCACTAAAAAATCTGGTGCTCTGTGCATCTGCTTGTACTTGCGGCAAGTCAATAAGGCAGTTGTTCCAGATAAGTACCCGCTACCAATGACGGAGGAACTCACGGCTCAATTCTATGATTCCACAGTGTTTTCTAAGCTGGACCTAAGAGAAGGCTATCTGCAGGTGCCCCTCCATGCTGACAGCAGAAATCTGACGACTTTTGTGACACATGAGGGAGATTTTCGTTATACTAGGATGGCTTTCGGCCTTAGCTCCGCCCTTTCCTGTTTCCAAAAGGTCATGACCTCTGTGCTAGCGGGAATACCAGGCGTCGTCATCTACCTTGACGACATTGTCGTGCATGGACCCACAATGCACACTCATGATGAGCACCTCAACAGGGTTTTTGATGCACTCAGCAAGCACAGGCTAAATTTAAATGGCGTAAAATGCCTTTTTGCTGTACCCGTCATCGAGTTTGTGGGGTTCAAGTTGTCAACACAGGGCATTTCCCCACTCCAGTCTAATGTGGAGGCCATTCAGTCCATCCCCAAGGCTTCCTTTCTAGGGATGACAGGCTACTACTTAAAGTTTCTGCCTCAGTATTCGGCCACTACTGCCCCACTGCAGCAATTACTCCGGAAAGATGAGCCCTGGGTGTGGACGCAGGCATGTATGGAGGCCGTGCGCGCCCTCAAGGCCCAACTCACTTCACCTCCCATACTTTCACACTTCAGCACCTCCTGTAAAACAATGGTCACCTGCGATGCATCTGCCACAGCCATCGGAACTGTATTGTCACAGCACCTGCAGATGGATATCTGCAGTGAATTTCATGGGGTTCCCTACAACCAGCGATATCTTGTGGTAGCATATGATTTGCACTCCAAATGGCCAGAACTAACCACCACCAGCTCAGTCACCACTCAAGTCATCGTGAACTTTCTGGACTCACTGTTCTCCCGTTGGGGCCTTCTACAAACTATTACAATGGATAACGGCCATCAGTTCGTCTCAGTAGACTTCTCTTCTTACCTGGAGAACAAAGGTATCCAACAAATCCACACCACCCTTTACCACCCCCAGGCCAATGGGGGAGTGGAACGTTTCCACCAGTCTTTGAAAAATGACCTTAGGGCACACCTGGCACAAGGGTGCTCTTTCAACCAAGTCATTCGCCTGACATTGCTACACTACCAGGCCTCGTGGCATAGCACCACTGGGGTCTCCCCTGCCTTCCTAAAGTTGGGCAGGGAACTCACTTTGCCGCTGGACAGACTCCGCCCCTCCACACCCAAGGGACCCCCCCTTGGGGTTAAAACCCACATCACTCGCCAGTAGCGCCGGATGAAACAGAGATTTGACAGGCTCCAATGTGCCAAAGAGTCAGATATTGCAGTTCAGGACTGGGTGAGAGTTTGCAGACCACACAGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524050 lncRNA upstream 7361 85758 ~ 90935 (+) True G456509
TU524081 lncRNA upstream 35735 62358 ~ 62561 (+) True G456539
TU524079 lncRNA upstream 37201 60864 ~ 61095 (+) True G456537
TU524067 lncRNA upstream 62680 34125 ~ 35616 (+) True G456525
TU524056 lncRNA upstream 73808 24277 ~ 24488 (+) True G456514
TU524052 lncRNA downstream 5367 105953 ~ 125908 (+) True G456510
TU524115 lncRNA downstream 34929 135515 ~ 135725 (+) True G456573
TU524125 lncRNA downstream 75797 176383 ~ 176794 (+) True G456582
TU524126 lncRNA downstream 77210 177796 ~ 178392 (+) True G456583
TU524132 lncRNA downstream 85046 185632 ~ 186342 (+) True G456588
CI01000321_00150756_00152124.mRNA mRNA downstream 50170 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00283589_00284224.mRNA mRNA downstream 182738 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 225807 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 340796 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 409968 510554 ~ 516356 (+) True CI01000321_00511077_00516356
TU524336 other downstream 325497 426083 ~ 427025 (+) True G456774
TU524456 other downstream 717878 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3688732 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3906040 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3906077 4006663 ~ 4009532 (+) True G459103

Expression Profile