RNA id: CI01000321_00326486_00355049.mRNA



Basic Information


Item Value
RNA id CI01000321_00326486_00355049.mRNA
length 5310
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000321_00326486_00355049
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 326393 ~ 355202 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATAAAAAAGGGTTTGTAACACTCCAACAACTGTGAACTGCAAAACCCAGAACCCAAAGCTGGCACCAGAAGGCACACAGCAATGCACAACCATGCAAAACCCTTCTGCAAAAGGCTCCTACCCAGCCGAGGACAGAACTGTCACTATGGCAACAGACCCAGGTATCAGACCTAACACGGGGAGAAGCTATGGATGGGAGCATTCTCATCGACGGATGACAGGTGATACTGTCAAGGCACCTGCTACCTCAACACCTGCTGAGCAAGCTCAGAGACCTGAACCTTGCTACCAGCTATTTCAGCGGCCAGGGAAACCACCACAACCTCCAGCCCTGCATGCCAGGATTAATAAGGGCCCAACAAAGGGTTTTGAACGGGATGTGGGATTTAAGACCACTCACCGTATCATCTACCCCGAGAGCGCTGTGGACATGGATAACTCCACTCATATGGTGCTGATTCCTTTCAAGACTCTGGATCTGCAGTGGCTCATCAGTGTCTTTACTACCAAACACATTGATCGGCCCGCAAGTTGTTGCTCAAGTAAGATGTCTGAGCTCGAGGAACTAAGACGAGAGATGGCGGAAATGCAAAGGCGGTTTGCAGAGCAGGCAGGGGCACTCGATCAAGCCAGAGCAGAGCAGAGAGAAGCTCTATCCCTAGCAAAGGTGGTAATTGAGAGCCAGACTTCTGCACAACCGACCCCAGCTGCCATTTATATTCCCCGAGACAGGAAGCTGCCTGAATTCAGTGGTTGCATGTCAAAGCCGGGAGAGCTGAGTATTGAAGAATGGGTGGTATCGATAAAGTCTGCATTTCAGGTCATGAGAGTTCCCACTGAGGATCGGATTGAGCTGGTGAAACAGAATCTAAAAGACGAGGCCAAAGCCACAGTGAAGTTTATGATGGATGGAAAGGAAGAGACGGTTGACAACATCTTCACTGTTCTCCTCGACACCTATGGAGATAAAGTGCCCATTGGTACGAGGCTTAAAGATTTCTATGATCGTGTTCAGAAGGTAGGGGAAACAATACGCTCCTATGCGTATGACCTTCGGGAAAGACTTAATCGTGTGCAGCGCAGAGAGCCAAACAGAGTGGCAGATGCTGAAAATGTTTTGAAGGAGCAGTTGGTGCTAGGCTTGCAAGATGACTTTTTGCGACGAGAGATGAAGCGTAGAGTTAAAGCCGAACCAGATTTGAGTTTTGTTCAGTTGATGCAGGCGGCAATTACCTGGTCAGAAGAGGAGGAAACACAGACTCCTAGTAATGTAAGGTCAGGTACCCGTGCCAGAGGGGTAGTGAATGCTGCTGCAGCACAGGATGCTTCCTCTGCTCTGTCGCTGGAGAAACTGCATGATGCGATCCAGAAAATAGCGGCTCGTCAAGAGGAACTATATCAAGCTGTTCATGGGAAAGAGAGAAATAGGCCACAGCAGAGCCATCCAAAGAAGCAACCATTAAAAGACAGTGAAGGTCGTTATATTTGTTATTCATGTGGTGAACCCGGACACACCAGTCGCTTTTGTCCGCAAGGTGGCAAGTTGAGGAGGGGTCCAGCTCCATCACAGCATACAGTGGAATTAGTTGAAGTTACTGAGAATGACTCTGGAGGTGCGGTGCAGAAAAGCCCAGGGCCCTCACTGATTAGATGTCACACAGCGGAATGGCTAGCTGATGAGACTGCTGAAAAACATAAGGGCAGTGCTTTTGGGGATTGCCTGTCGATTGAGGTGAAGATAGCTGGTGTCAAGACCAAGTGCCTCTTAGATACAGGGTCAGAGGTGTCCACCATATCTGAGTCACACTTCAGGCAGCACTTCGAGGACCAAAAACTGAAGTTATCCTCTGCGTGCTGGGTTAAGCTGACCGCGGCCAATGGACTGGACATTCCTGTCTTGGGATGCTTACAGGCTGATGTAGAATGTCTGGGAAAAGTACTTCCTGGGAAGTGTATATTTGTTCTGACTGACACAAGCCCTGATGTGAAGGAAATGAAAGGGATGTCTGGGATTATCGGGATGAATGTGCTCAATGAAGTTCAGTCCTTGTTCATCTCAGCGGAGGGAATGGAGAGGATTGATAAGTATAATCCGCGAGATGAAGCTCCGGTCCAGAGGGTGCTTGCTAGAGTTGAGAAAGAAGCTGGACATCTGAGGCCCGATGGAAGGATTGGTTATGTCAAGATTGCTGGAAGACAGGCTGTCACTATTCCTCCCCGCTGTGAGAAGGTGCTGGAAGGTCGTTGTGGAGTGTCACCCAGGGTGAGGAGTCATGTGCTTGTAGAGCCAGTAGCTGGAACAAGTTTGCCAAAAGGACTCTTAGTGGCTCACGTTCTTGCTAAAACAGAGGGTGGAAAGGTCCCTGTGCGTATGGTGAACTTGAGTGGAAAGGCTGTTAGACTTGCTCCCCGATCCAGAGTTGCTTCTCTGTATAAGCCCAAGGAGGTGATCACAAAGGATGTGCTCGAATTTGAGGAAGATGACGGCATACTTCATGTCAAGGAGTTGGTGCGAGACAAGGTTCAGGCTGATAAAACCTCACTTGTGCCGCTACCAGTTCCTGTTGAAGTGAACTATGAAGGACTCACACCAGAACAATGTGAGAGGCTCATTGAGTTGTTATCGAAGCACAGAGATGTTTTCTCCAAGGATGACCAAGATTATGGCTACACCACGGCTGTGGTGCACAATATTCCTACAAGTGAAGCACCACCAATAAAGCAGCGACATCGTAGAATACCACCACAGATATTCCAAGAGGTCAAAAGGCATGTCCAAGATCTGGTGTCCCAGGGAATTCTGAAAGAGAGCAGTAGCCCTTGGGCATCACCCGCAGTTATCGTCATGAAGAAAGATGGCAGTGTGCGTTTCTGCTGTGATTACCGAAAGCTGAACCAAGTGACGTGTAAGGATGCATATCCGCTTCCTCGGGTGGACGAGTCCTTAGACGCTTTGGGTAATGCTAAACTGTTCTCTACACTAGACCTGACTGCTGGGTACTTTCAGGTAGCGGTGAGCGAGAAAGATCGAGAGAAGACAGCTGTCACCACCCCATTTGGCCTGTTTGAGTGGACCAGGATGCCATTCGGGTTGTGCAACGCCCCGGCCACCTTTCAGCGCCTTATGGGAGTGGTGCTTGGTGACTTGACCTTTGATGTTCTTCTGGTTTATCTGGACGATGTCATTATCTTCTCCAAAGACTTTGAGAGCCACTGTGAGAGGTTAGAACTTGTCTTCAACCGTCTGAAACAGCATGGGCTAAAGCTAAAGCCGAGCAAATGCTTTCTCCTAAGGCCGGAAGTGAAGTTTTTGGGGCACCAGATCTCAGCAGAAGGCATAAAAGTGGATAACGAAAAAGTTAAAGTCCTGGACACGTGGCCAGTTCCGAAAAGTGTAAGAGAGGTCAGGCAAGTACTTGGGTTTATGAGCTACTATAGAAAATTCGTCCCAAGGTTCGCACAGATTGCCAAACCACTACATGCGTTGGTAGGTGGAGGAAAGAAAAATAGAACCTCTGCAAATTTCACCTGGAGTCAAGAATGCCAGGTTGCATTTGACGAGTTGAAGCAGTGCTTGATGTCACCCCCCGTCCTTGCATACCCCAACTTCAGTTTGCCCTTTACACTTGCCACCGATGGAAGCCATCATGGACTGGGGGCTGTACTCAGTCAGAAGCAAGGAGGGACTGAGCATGTCGTGGCATATGCAAGCAGAGGTCTGAGGAGATCAGAGAAGAATGACAAAAACTATAGTGCGTTCAAACTGGAACTGCTTGCGTTGAAGTGGGCAGTCACAGAAAAATTCAGAGAATACCTTATGTATTCAAGATTCACCGTGATTACCGACCATAACCCGCTACGTTACCTTGATTTGGCTAACCTCGGCGCGGTTGAGCAACGCTGGGTAGCACAACTGGCAGAGTACAACTTTGAAGTATGCTACAAACCTGGCCGACTCAACACAAGTGCAGATGCATTATCGAGAATTCCTTACAGGGAGGAACCGGAGAAGGATGATGATGGCAAGGATTTCATCCAGCTAGGAGCTGACGAAGTGAGGGCATGTTTGTGGCCGGCCAAAAGGTTTGACCAGGAGGAACCTGAAGAGAAAAAGAGAGATTGGAAGACTCACCTTCCGGAGCTGGTGATGGCTTACAACAGTCATGTCCATTCATCCACTGGTTATTCCCCGTTCTATCTGATGTTTGGAAGAGATGCACGTTTACCAATGGATGTGCTTGGTGAAAAGGATTTAGAAGAGGTTGAAGTTGATAACCTGGATGATTGGGTGAAAAGTCATCACGCAAGATTGAAGACTGCTGTGGAGGTTGCAAACGCAGTGTCTCAAGGGGCTTCCAGAAGAAGAAAGAGGATATATGACCGCAAGTCGTTTGGAGCTCTTGTGAGGCCTGGGGATCGGGTGCTACTGCGTAATCACAAACACAGGGGTAGAAACAAAATTCTGGATAAATGGGAAGACACACCGTACATAGTAGTAAAGCAAAACCACTCAGACATACCTATGTTTACTATTAAACCGGAAAAGGGGGGTTCGGTGAAGGTAGTACACAGGGATCAGCTTCGGCACTGTTCATTCCCGTCACCTACGACACCGCGTGCACACCGGCGCAGATTGAGAGACAAGCCAGAGTCAGACACAGACATGTCAGACGTTATCTGCTTTCCAGAAACTGTACAACATTCCACTTACCATGCACACACAAGGGTGGATCAAGGGGAGTCAGGGGAAGTAGGACAGCATGACAGCAATGGGGGTCAGGATGTAATATCAGAATCAGAGTTGAGGGTACAAGATGATTCAGATGATGCTGATGTTTCAGAAGTTGAGAAAGTGTTCCTGAGTTCAGACATTCTCAGAGACGAAACAAGGATGAACCTGCTGGAAATGTCGATGGAGTGGCAGGGTTTAGTAGGGGGGAAATTCTTCCAGGGCAGCTCTAACAAATTTCCCCTACAAGACGGGCTAAATACCCCGTCACACATAGTAAAAGATAACTTCTTTAAGGATGAAGCAAGCTATAAAGGTGGCGTTATCTTGTTTGATTACATGGTAGAGTGGCTGCTACCATGGCTAAAGAAAATTGAGTTCCCCCATTGCGTCCTCCAAAACTTAACATCCGATTCCCCTGAATGAATTTCTTGAAGAAAGATAAGATCAGCTAAACTTCTTTTACAGAACAAAAAATCGCTTTTCTTTTCAGATTATCACGCAAACCTCAGACATTTAAAGTTACAATCGACAAGGATTTAAACATATACTGCATAACAAGAACTCCAAACAAATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524313 lncRNA upstream 756 325425 ~ 325637 (+) True G456751
TU524292 lncRNA upstream 10528 315397 ~ 315865 (+) True G456730
TU524282 lncRNA upstream 20170 305966 ~ 306223 (+) True G456725
TU524268 lncRNA upstream 24323 301793 ~ 302070 (+) True G456711
TU524247 lncRNA upstream 62558 263583 ~ 263835 (+) True G456691
TU524342 lncRNA downstream 36990 392192 ~ 392416 (+) True G456780
TU524344 lncRNA downstream 40840 396042 ~ 396304 (+) True G456782
TU524337 lncRNA downstream 48170 403372 ~ 403765 (+) True G456775
TU524353 lncRNA downstream 130354 485556 ~ 485862 (+) True G456791
TU524355 lncRNA downstream 131601 486803 ~ 487488 (+) True G456793
CI01000321_00283589_00284224.mRNA mRNA upstream 42056 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 174204 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 225807 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00441382_00448773.mRNA mRNA downstream 86180 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 155352 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 193893 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 204066 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 294024 649226 ~ 658950 (+) True CI01000321_00649226_00658653
TU524336 other downstream 70881 426083 ~ 427025 (+) True G456774
TU524456 other downstream 463262 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3434116 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3651424 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3651461 4006663 ~ 4009532 (+) True G459103

Expression Profile