RNA id: CI01000321_00549095_00550611.mRNA



Basic Information


Item Value
RNA id CI01000321_00549095_00550611.mRNA
length 1006
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000321_00549095_00550611
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 549095 ~ 550648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCACAGTGCACCGCAATGGTCGGAGGATGCTATAGCATGCCTCCAAGGCTGCTTTGTGTGTACAGATTGGGAAGTCTTTGAGGGAGAGCTTGATGAGCAGACTGAAGTTATTACTGATTACATTAAATTCTGTATGGATACTTTGATACCAATCAGAAAGACGATCAGAACATATCCAAATTCAAAACCGTGGATCAACCCACAGATGAAATGTCTCTTTCATAAGAAAAAACTTGCCTTTAGGCAGAAGGACTTTGTGGGCCTCAAAATTATAAACCGGGACATTAATGAAATTTTAAAGGCCAAAAAGAACTATACAAATAAACTGGAGCAGGATTTCGCAAATATGAACACCAAACAGGCCTTTCATCGTGTCAGGACTCTCAGTGGACAATCTATCAAACAAACTATTTGTGTATCCGATCCTACTACTTTTGCTGCTAATCTTAATCATTTTGATACCTCTGATTTTTCAGCAGAGTGTAACAGCATTTTGGATTCTTTGCCTTCTCAAGAGTTGGGTTATGAATCCCTCTTAACCAAGCAGGATGTCTATTTCCAGCTCATTAAGTGCAAACTGAATAAGGCTCCTTGCCCGGATGGAATTCCAGGATGCGTACTTAATCCATTTCTCTATATCCTTTATACAAATGATTGTCAGAGTCCACTTACTCATTATTTTAAATATGCTGATGACACAGCCATCCTTGCACTGCTTAATATCAAGGACAATGATTCTTTTGTGGACTATCAACATTCTATAGCATACTTTACTACATGGTGTGATGATAACTTTCCTCACCTTAATATTTCAAAGACTAAAGAATTGTTTTTTAGCTCTTCCAAAACACAGATCCATCCTTCCAGTATTATCATCAATGGAAAGATGGTTGAAAGGGTGGAGCATTCAGTGGACAGATTTTTGGATATCAAAAAGTGTTTGCTTGTCATAGACAAAAGCAGCTGAAGCATATTGAAATACCAGAGATAAAAACAGAATAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524371 lncRNA upstream 3984 544844 ~ 545111 (+) True G456806
TU524368 lncRNA upstream 9401 534430 ~ 539694 (+) True G456805
TU524362 lncRNA upstream 53614 495235 ~ 495481 (+) True G456800
TU524360 lncRNA upstream 55288 493340 ~ 493807 (+) True G456798
TU524357 lncRNA upstream 60786 487957 ~ 488309 (+) True G456795
TU524408 lncRNA downstream 82076 632724 ~ 633919 (+) True G456842
TU524437 lncRNA downstream 166051 716699 ~ 718214 (+) True G456867
TU524439 lncRNA downstream 184539 735187 ~ 736481 (+) True G456868
TU524490 lncRNA downstream 251012 801660 ~ 801879 (+) True G456911
TU524491 lncRNA downstream 251512 802160 ~ 802388 (+) True G456912
CI01000321_00511077_00516356.mRNA mRNA upstream 32739 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00441382_00448773.mRNA mRNA upstream 100315 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00326486_00355049.mRNA mRNA upstream 193893 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 264758 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 396906 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00559268_00567811.mRNA mRNA downstream 8620 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 98578 649226 ~ 658950 (+) True CI01000321_00649226_00658653
CI01000321_00697882_00700283.mRNA mRNA downstream 146418 697066 ~ 700313 (+) True CI01000321_00697882_00700283
CI01000321_00785868_00790038.mRNA mRNA downstream 235220 785868 ~ 791009 (+) True CI01000321_00785868_00790038
CI01000321_00815160_00819665.mRNA mRNA downstream 264512 815160 ~ 819749 (+) False CI01000321_00815160_00819665
TU524336 other upstream 122070 426083 ~ 427025 (+) True G456774
TU524456 other downstream 267816 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3238670 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3455978 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3456015 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3934749 4485397 ~ 4488552 (+) True G459303

Expression Profile