RNA id: CI01000321_00559268_00567811.mRNA



Basic Information


Item Value
RNA id CI01000321_00559268_00567811.mRNA
length 1013
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000321_00559268_00567811
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 559268 ~ 568138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATCAAAGTGAAGTTTACTCAAGGACATGTTCCCATTTCTAATGGCAACTACATTTGGACGCTGGGCTTTAATGAAGTAGAGTGCTCATCTGACCTCTCAACCACTGGGGTTCAACAACTTAAGGTCCCATTAGTGCTACTACATGGTTTTGGGGGTGGAGTGGGTCTCTGGGTGAAAAACCTATCTGCCTTTGCAGGGGAAGGAAGGCCTGTGTACGCACTGGACATGCTGGGATTTGGACGCAGCAGTCGACCAACCTTTGGTAGGGATGCCAAGGATGCAGAGGAGCAGTTTGTACAATCCCTGGAGGACTGGAGAAAGGCAGAAGGGTTGGAACATATGATTCTCCTGGGCCATGATCTTGGAGGATATGTGTCTACTGCCTATGCCCTGAAATATCCTCACAGTGGTGAGACAGCATTTAAAAACATGACAATCCCATACGGATGGCCTCAGCACCCCATGATGGAACAAGTGGAGAAGATCAGTCCCTCTCTTCCCATGACTTTCATCTACGGATCACGTTCCAGCATTGAAGGCCAATCAGGAAAAGCCATTCAAGAAATGAGACCAAATTCGCAAACAAAAATCATAGTTATCCAGGGTGCAGGTCACTACGTATTTGCAGACCAATCAGAAGACTTCAACCAGGCTGTGCTCAAGATATGCAATAATGAATGCTGAGAGAAGAGAAAACATGAGTCAGGTGTGAGTTAAAGGATAATCAAATGAAGGTGTGAAGGGAGAGATAGATGTACTATATAAGAGGAAAAGGAGGCAGAAAATATGAAGGAAAGAGTAAAAATTTCATGATCATTTATATAGCTTTCGACAAATGTGCATTTAAAAATTAATACATACATACATAACATTGTACTCATGAACTACATTTTAAAAACATCTGCTATATGAAATCAACAAAAAGTGATTTTTATTATTATTATTATTTTGGAAAATCTTCAGTACTTCTAATTAATTCATTATTCAAGCACAAGTATGCACATTGTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524371 lncRNA upstream 14157 544844 ~ 545111 (+) True G456806
TU524368 lncRNA upstream 19574 534430 ~ 539694 (+) True G456805
TU524362 lncRNA upstream 63787 495235 ~ 495481 (+) True G456800
TU524360 lncRNA upstream 65461 493340 ~ 493807 (+) True G456798
TU524357 lncRNA upstream 70959 487957 ~ 488309 (+) True G456795
TU524408 lncRNA downstream 64586 632724 ~ 633919 (+) True G456842
TU524437 lncRNA downstream 148561 716699 ~ 718214 (+) True G456867
TU524439 lncRNA downstream 167049 735187 ~ 736481 (+) True G456868
TU524490 lncRNA downstream 233522 801660 ~ 801879 (+) True G456911
TU524491 lncRNA downstream 234022 802160 ~ 802388 (+) True G456912
CI01000321_00549095_00550611.mRNA mRNA upstream 8620 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00511077_00516356.mRNA mRNA upstream 42912 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00441382_00448773.mRNA mRNA upstream 110488 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00326486_00355049.mRNA mRNA upstream 204066 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 274931 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00649226_00658653.mRNA mRNA downstream 81088 649226 ~ 658950 (+) True CI01000321_00649226_00658653
CI01000321_00697882_00700283.mRNA mRNA downstream 128928 697066 ~ 700313 (+) True CI01000321_00697882_00700283
CI01000321_00785868_00790038.mRNA mRNA downstream 217730 785868 ~ 791009 (+) True CI01000321_00785868_00790038
CI01000321_00815160_00819665.mRNA mRNA downstream 247022 815160 ~ 819749 (+) False CI01000321_00815160_00819665
CI01000321_00844476_00879488.mRNA mRNA downstream 276156 844294 ~ 879693 (+) True CI01000321_00844476_00879488
TU524336 other upstream 132243 426083 ~ 427025 (+) True G456774
TU524456 other downstream 250326 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3221180 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3438488 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3438525 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3917259 4485397 ~ 4488552 (+) True G459303

Expression Profile