RNA id: CI01000321_01411682_01416499.mRNA



Basic Information


Item Value
RNA id CI01000321_01411682_01416499.mRNA
length 1482
RNA type mRNA
GC content 0.44
exon number 8
gene id CI01000321_01411682_01416499
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1411682 ~ 1416536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATGTATGATAGAGCGACAAAGAAGTTGGTCAAACAGATAGATCCTAAAGGCACTCTGATTGCGACCTCCAGCTTGAATGATTCCAGAAAACTCAAGCCGCTTGCAGTGGTGCTGAAAGTCCAAAAAGTGTGGTTCTGGCAGCAAACCAAATACATACCCACACACTTCAATCTTAATCACCTGCTAGATGGGGAAGGGATTAAACCAGTATGTGAGGAGGAAGAGTTTGTGAAGTATAAGGGAACACACATAAACACCAGGTCTGGATCTGTAGATTTGGGAGGTGCAGCTGTCAACCTAAATGTGAATGGACAGGGCTCATCACAACTTCATTTATCTCTAGGGAAACTTCAGAAGGAATGCGTGGATATTCCAAAACTAATAAATGACTCCAAAGGAAGGAAATTGGACCTCACGCACTCTTTGATCCAGCAGTCCCAAAAGAGGAACAAGGGTTTTACAATCCTTACAGAGCGAATCTTCACCACCTGCAACTGCTCAATCTCTTGTAAAGAACTGGAGAAGGGTAGCTTCCATGCCATATTTGGAGTGGGTTGTGTTGAGATGTACATGGAAGACACTGGAAAACTGCAGTGTGACTCTGAGACTGTATTAGACATCCCACCGAACACCGTGATGGCTTACAGTGTCATTGAAATGAACATTGACAATGACGGATACTTTGCACTTGCAGATGTTCAGACTAGCTTTTGTGCACTGGCTGACTTGTCTGCTGAGAGCCGTTCCTCCATCCTGCTTCTGTTGAGGAAAATTCTGTTGGACCGATCTGTCTTGTCAGCTTTAGCGGAAAGAATTATGTTAAGCAGTGATGATACTCCATGCTTCTTAACCAACGAGCTGTCTGAAAAACAGAGACAGATTATTGAGCCGTTTTTAGATTTACTGATGCGTGAACCACTTGACAAGAACGGACTTTCCACATCAACGTCATTGTCAGATGGATGTCAGATATCAACAGCCAATCACAGTGATCTTTCCTTGGAATCTGAGTTTAAAGGATCAAGCCACAAACCAGAAGAACAGAATGGCTGTCACAACGCAGTATCCAATCAGAAAGCATGCTCAACAAAAGCAAGCAAGCACAGCATGAAGTTTATGGATGCCATGCAAATGCTGATCAGCGCTCTTGAGGAGATGACGGATGCTGGACTGAACCTGCTAGAACAGTTCTGCACTTCTGAAGGTCTCAAAAGTCTACAGGATTTAGTAATTCATCTGACTTCTGACTACACGGACACCATCCCTGTTTTCCTACAAAGTGACGATGAATTCCACAGAGTGGAGGCACTTTTTAAGTCATGTAATGTTTTACTAAAGAAAGAGAAGGACACATTAACCTCAGAAATGACTTGCAGTGAGGGATTCCTCCCTGTGTTACTGTGCATTGCCATCCATGGCCTTGCTTCCCTAAGTGGTGCATGACATTGTTAATGCTTTTTCTGATGGCTAAAATGGCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524729 lncRNA upstream 17941 1393541 ~ 1393741 (+) True G457112
TU524726 lncRNA upstream 20498 1390918 ~ 1391184 (+) True G457109
TU524725 lncRNA upstream 21628 1389591 ~ 1390054 (+) True G457108
TU524724 lncRNA upstream 22453 1388732 ~ 1389229 (+) True G457107
TU524723 lncRNA upstream 22995 1388353 ~ 1388687 (+) True G457106
TU524740 lncRNA downstream 13693 1430229 ~ 1431421 (+) True G457121
TU524753 lncRNA downstream 34741 1451277 ~ 1453283 (+) True G457133
TU524759 lncRNA downstream 52807 1469343 ~ 1469544 (+) True G457139
TU524717 lncRNA downstream 68589 1485125 ~ 1486634 (+) True G457100
TU524782 lncRNA downstream 202367 1618903 ~ 1619330 (+) True G457160
CI01000321_01362387_01381302.mRNA mRNA upstream 29025 1362387 ~ 1382657 (+) True CI01000321_01362387_01381302
CI01000321_01348009_01350252.mRNA mRNA upstream 59908 1348009 ~ 1351774 (+) True CI01000321_01348009_01350252
CI01000321_01342947_01344272.mRNA mRNA upstream 67071 1342900 ~ 1344611 (+) True CI01000321_01342947_01344272
CI01000321_01242644_01243808.mRNA mRNA upstream 167269 1241961 ~ 1244413 (+) True CI01000321_01242644_01243808
CI01000321_01238511_01240051.mRNA mRNA upstream 171356 1238374 ~ 1240326 (+) True CI01000321_01238511_01240051
CI01000321_01473475_01476619.mRNA mRNA downstream 56939 1473475 ~ 1477216 (+) True CI01000321_01473475_01476619
CI01000321_01477590_01479280.mRNA mRNA downstream 61054 1477590 ~ 1479280 (+) True CI01000321_01477590_01479280
CI01000321_01480684_01483493.mRNA mRNA downstream 64148 1480684 ~ 1483792 (+) True CI01000321_01480684_01483493
CI01000321_01491101_01521160.mRNA mRNA downstream 74357 1490893 ~ 1521421 (+) True CI01000321_01491101_01521160
CI01000321_01540466_01544669.mRNA mRNA downstream 123930 1540466 ~ 1545019 (+) True CI01000321_01540466_01544669
TU524456 other upstream 588835 818464 ~ 822847 (+) True G456881
TU524336 other upstream 984657 426083 ~ 427025 (+) True G456774
TU525588 other downstream 2372782 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2590090 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2590127 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3068861 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 3098998 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile