RNA id: CI01000321_02069556_02082569.mRNA



Basic Information


Item Value
RNA id CI01000321_02069556_02082569.mRNA
length 1750
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000321_02069556_02082569
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2069254 ~ 2083342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAATCCAAAAGTAACCAACTACTTTTGCATAAATAGTCAAATTTGTCATCCAGAGAATTATTTTTACACGTGAAGGAAGCAAGTTTAGGCTTTGAATATGTTCTGGAGTAGATTTACAACTATTAATTCATTCAAGTCATGGTTTTGGTGGAACTTTTCCACATGTTGGAATATACTCAATATAATAACCTGAAAGCATTATTGTTATTGAAATCAAACCTTTTGAGTATGGAACAGATTTAAGTGTATTATAAAATTAAGCCTTCCATTTCCTTCCACATCTGGGGTCCCGACGCACATGAAGATAAAGCGGTCGTGCCAGGTCTCTCTCAAAGAAGTGACTTGCTGCCTATGCGCAGATTTCGCATGCTATGAGAAAACAAAAGGTTTCAAAGCGTACATTTGTGTCTTAAAGCTCCGGAAAACACAAAGGCTCAGCCCGGTGATGGACTCGGCTGCCAGGCCTACAGATGGAGGGTCTCTACTGACGATGTCACGTCTGGGCTCACACATGCACGCTCAGAAGGACAGTGGGCTGTCCGGTGTAGCATCATTAGCTCAGCGGAGACGTGGCGGCCCTGACACATGTCGAGCGGCGTGCAGCCAACCCACGGACGAGCACGAGTCGCTCCTGCATAATTTGAAGGTTAACTGCCTTCTTGCTTGTGAAGAGTACATTTCTCACACACACTCAAGCTTAACACACGTAAGAACATTACCATCATCGCCGCGCGCAAGTTTTAACGCAGTACACCGTGCACGTCAAGCAGCAAAGCCCATTAAAGGGGTATCGGGCGGCGCGTCTCTCTCCGCTACTTTAACAGGCCTGCTCGTATGTATACTTCTGTACGAGATGTATTATCTGGCAAACAATCCACTTAATGCCCAAAGTGAAGTGAAGAGGCGTTTTTACAAGTCTGTAGATGAGCCTCGCTTTCATGGACGCTGTCCGTACTCTGATTTAGCACGCTAGCCTGCCACTTGACTGTCAGTCGGCCAGAGTAATCTCTCCCCGTCAGCTGCCAGCGAGGGTGAAGTTCATCTTTGCAATAACGTTAAATGCACTGGCGCTTCATCCTTCATGAATATGAATGGCTATATAAATAGGAAAGTTGAAGAGCAGATAGATCGGGTGGCTGTCACTTCAAACTTCCTAATCATCTCCGCTAAAAGCATGCCTTGCCAAACAACACGAGTCAGTGGGATTTGACACGAACCTTGGGAAGTAGCGCTGTTTTAGTTTGTTTTTACCACGCAACCTATCAAATGTATCTCCCTCGCGAGATTCTCATGGGACGGGTGTATCAGCTGCAACACGCTATGGCGGCCGATTACAAGACATGTCTTATCTTTGATTTTGCAGCATGTGGTCTCCTGAGGGTTTGCACCTACTGTGAACGCATAACGATTCCTAATTCATTGTAACTCAAAATAATAATTGTTGAAACTTACCGAGTGTAGGGAAATAAGGAGAAATTGATATAAATAATTATTAAGGCACATCAGCAGAGCTAGCTAGTATGTCGTCTTTAAAGAAACAATTCACCCAAATATGAAAATTCTGTCAACATTTATTCACCCTCATGTCGTTCCAAACCTGTATGACTTTCTTTTGTGTGTGTGTGTGTGTGTTTAACGCAAAAGGTGCTATTTTTATCCAATTTCGTCAATCCAAATCATATTTTAGTTACAGTAAGTCACTTTTTCACAGAAAATCTTTTGAGTCATTGAGTTGTACTCGATTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524960 lncRNA upstream 26152 2030255 ~ 2043102 (+) True G457307
TU525025 lncRNA upstream 43745 2025298 ~ 2025509 (+) True G457372
TU524911 lncRNA upstream 96047 1972998 ~ 1973207 (+) True G457282
TU524898 lncRNA upstream 107504 1961457 ~ 1961750 (+) True G457269
TU524890 lncRNA upstream 116635 1952359 ~ 1952619 (+) True G457262
TU525029 lncRNA downstream 23664 2107006 ~ 2107463 (+) True G457376
TU525047 lncRNA downstream 76635 2159977 ~ 2160736 (+) True G457394
TU524985 lncRNA downstream 96447 2179789 ~ 2181161 (+) True G457332
TU525049 lncRNA downstream 108864 2192206 ~ 2192616 (+) True G457396
TU524950 lncRNA downstream 189458 2272800 ~ 2284518 (+) False G457306
CI01000321_02060877_02067096.mRNA mRNA upstream 1733 2060877 ~ 2067521 (+) True CI01000321_02060877_02067096
CI01000321_01789650_01796167.mRNA mRNA upstream 272737 1789304 ~ 1796517 (+) True CI01000321_01789650_01796167
CI01000321_01778626_01782120.mRNA mRNA upstream 286919 1778626 ~ 1782335 (+) True CI01000321_01778626_01782120
CI01000321_01773447_01776531.mRNA mRNA upstream 292710 1773072 ~ 1776544 (+) True CI01000321_01773447_01776531
CI01000321_01767234_01768560.mRNA mRNA upstream 300487 1767234 ~ 1768767 (+) True CI01000321_01767234_01768560
CI01000321_02205260_02210288.mRNA mRNA downstream 121175 2204517 ~ 2210526 (+) True CI01000321_02205260_02210288
CI01000321_02306311_02308161.mRNA mRNA downstream 222779 2306121 ~ 2308202 (+) True CI01000321_02306311_02308161
CI01000321_02359797_02366314.mRNA mRNA downstream 276455 2359797 ~ 2366359 (+) True CI01000321_02359797_02366314
CI01000321_02371786_02421055.mRNA mRNA downstream 288319 2371661 ~ 2421699 (+) True CI01000321_02371786_02421055
CI01000321_02433523_02469055.mRNA mRNA downstream 350181 2433523 ~ 2469069 (+) True CI01000321_02433523_02469055
TU524456 other upstream 1246407 818464 ~ 822847 (+) True G456881
TU524336 other upstream 1642229 426083 ~ 427025 (+) True G456774
TU525588 other downstream 1705976 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 1923284 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 1923321 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 2402055 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 2432192 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile