RNA id: CI01000321_03348458_03349276.mRNA



Basic Information


Item Value
RNA id CI01000321_03348458_03349276.mRNA
length 763
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000321_03348458_03349276
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3348374 ~ 3349487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAATATGGATGAGGCCTCATAACCCATCACAGTTCAGGCACTGACAGGCTCAAATCTTTCACTTCAGGACATAAACTGCTATGGAAATGAAAACTACACTCAGCATCATTATAATTCTTCAGCTAACTTTAGGAGCCAAACCATCACTGGAAAACCTCAGAGCCATCTGTGTCCATGGAAATGGCCGTCCAAGATATCCTGCCAGTGTCATCCCATCTTCACATTATGGATATTTTCACCGTGCGGCAGCTGCAGTAAACAGAGCAGAAGCATGGTTTAGTCAGTGCTGCCAGAGAGGTGTGACTCAAGGATGCCAGCAGATCGTTTGCTGCGCCAAACAGGCGTGGGAAACTGCTTTGTCCCTTTTCTGTACTGAGGAGTACTCCACCATGACTTTGGTCCATGAGTGCTGCGAGAAGAAGGGAGAAGAAAGGTGGAACTGCTTTGAAAATCAGGCTCCTAACCCCTCCTACCAACCCCTGTCTGGTTACAGAGCCCCCATAATACCACCTGATAGGATTTTCATCTGGGACCCCAACACCTGTTAAATCTCTTAATGCCATATGACAACCTGAACAATTTTATTTGATTTAACAGCAACAAAACCTGTCAATTAATCAACTGTGAAGAGTCAGAATATAACATGCTTTTCAAGTAAATTAAACATGCTCAGAGTTCTAGAAGAGCTGAAATATAACCCTGTGCATCAATTTATTTATCTTCACACGTATTATTGTATGCCATAGAAAAACATGCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU525480 lncRNA upstream 7630 3340520 ~ 3340744 (+) True G457775
TU525476 lncRNA upstream 28280 3319568 ~ 3320094 (+) True G457773
TU525475 lncRNA upstream 54996 3293130 ~ 3293378 (+) True G457772
TU525474 lncRNA upstream 55246 3292907 ~ 3293128 (+) True G457771
TU525469 lncRNA upstream 143253 3204735 ~ 3205121 (+) True G457766
TU525483 lncRNA downstream 1726 3351213 ~ 3352677 (+) True CI01000321_03351289_03352346
TU525485 lncRNA downstream 34946 3384433 ~ 3448259 (+) True G457780
TU525428 lncRNA downstream 51943 3401430 ~ 3403897 (+) True G457726
TU525434 lncRNA downstream 65761 3415248 ~ 3423378 (+) True G457732
TU525508 lncRNA downstream 158482 3507969 ~ 3572127 (+) False G457797
CI01000321_03324526_03332195.mRNA mRNA upstream 14512 3324526 ~ 3333862 (+) True CI01000321_03324526_03332195
CI01000321_03303567_03306121.mRNA mRNA upstream 42253 3303278 ~ 3306121 (+) True CI01000321_03303567_03306121
CI01000321_03294654_03298670.mRNA mRNA upstream 49573 3294470 ~ 3298801 (+) True CI01000321_03294654_03298670
CI01000321_03258454_03289329.mRNA mRNA upstream 58941 3258322 ~ 3289433 (+) True CI01000321_03258454_03289329
CI01000321_03245667_03250403.mRNA mRNA upstream 96817 3245667 ~ 3251557 (+) True CI01000321_03245667_03250403
CI01000321_03351289_03352346.mRNA mRNA downstream 1497 3350984 ~ 3352541 (+) False CI01000321_03351289_03352346
CI01000321_03361065_03369574.mRNA mRNA downstream 11578 3361065 ~ 3369574 (+) True CI01000321_03361065_03369574
CI01000321_03375884_03385622.mRNA mRNA downstream 23946 3373433 ~ 3385854 (+) True CI01000321_03375884_03385622
CI01000321_03472129_03487677.mRNA mRNA downstream 121753 3471240 ~ 3487947 (+) True CI01000321_03472129_03487677
CI01000321_03490261_03505373.mRNA mRNA downstream 139600 3489087 ~ 3505473 (+) True CI01000321_03490261_03505373
TU524456 other upstream 2525527 818464 ~ 822847 (+) True G456881
TU524336 other upstream 2921349 426083 ~ 427025 (+) True G456774
TU525588 other downstream 439831 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 657139 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 657176 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 1135910 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 1166047 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile