RNA id: CI01000321_03674424_03676748.mRNA


Basic Information

Item Value
RNA id CI01000321_03674424_03676748.mRNA
length 765
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000321_03674424_03676748
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3674424 ~ 3677004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCACTTGACTGCACCTTTCTCCTCATCTTCTTGATGACTTGCGTTGAGCTCTTCGTCACAGCTCGTCCCACTAATATACCACAAGGAAAAAACGGTCTGCAGATGCTGCAACAAGAAATGCGTACGCTATTCAAAATAGTATCTGAAGAAAAGCAAAGGAATAAGTTGTACGACTTTGAACAATCGCTCACATCCCTGCCCCCGTTGAACTTCAGCACAGAAGACCTGAAATCACTCGAGATGAGCAGTACCTTAGCACAGCTGTACTCTGGTCTTAAATCCTTCAAGTTCCATCTTGACTGGATCCAGCAGAAAGAAGACGAAATGGGGAATGATTATTCTATGACAAAGAAGATCGCTCATCATATCCAAACCATTAGCCACAAGGTGCTCACACAGACAGCCTGGAGCTTGTTCCAGGCCAAAGTGGAGATCCACGAGAAACTGTACCACTTTTGCAACTGGTACTTTAGAGCACTGGCAGTCCTGAGACACAGACAACAGTGATCATACAACATCATATGACACCAGTAGCCCTCAGGTGAGGTCAACAGGCATCGTGGTAGCATCATCTGACTTGCCTTAATGTTTGAAGGGATGGAATGAATGTTCCAGCCTTTGTAAGTCATCTTCCATTTTGACAGTCCATCAGTTAACATTTCCTATGTGTGATGTTGTTTTTTAATATTATTAATAAGTTATGTATTTAATATTTATTGAATTGAGTTCTATGTTTACAATGAAGGATTTTTTTATACATCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525569 lncRNA upstream 38944 3631777 ~ 3635480 (+) True G457842
TU525513 lncRNA upstream 102297 3540803 ~ 3572127 (+) False G457797
TU525590 lncRNA downstream 15877 3692881 ~ 3696205 (+) True G457859
TU525603 lncRNA downstream 45745 3722749 ~ 3732110 (+) True G457872
TU525606 lncRNA downstream 59442 3736446 ~ 3738593 (+) True G457874
TU525592 lncRNA downstream 126002 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525610 lncRNA downstream 161303 3838307 ~ 3838532 (+) True G457878
CI01000321_03650761_03655489.mRNA mRNA upstream 18915 3649366 ~ 3655509 (+) True CI01000321_03650761_03655489
CI01000321_03597314_03599713.mRNA mRNA upstream 74462 3596346 ~ 3599962 (+) True CI01000321_03597314_03599713
CI01000321_03561216_03562202.mRNA mRNA upstream 112132 3558614 ~ 3562292 (+) True CI01000321_03561216_03562202
CI01000321_03550354_03554714.mRNA mRNA upstream 119122 3550022 ~ 3555302 (+) True CI01000321_03550354_03554714
CI01000321_03532268_03545406.mRNA mRNA upstream 126865 3531993 ~ 3547559 (+) True CI01000321_03532268_03545406
CI01000321_03680978_03683234.mRNA mRNA downstream 3974 3680978 ~ 3683679 (+) True CI01000321_03680978_03683234
CI01000321_03702229_03709660.mRNA mRNA downstream 25084 3702088 ~ 3709808 (+) True CI01000321_03702229_03709660
CI01000321_03714795_03718845.mRNA mRNA downstream 37472 3714476 ~ 3719085 (+) True CI01000321_03714795_03718845
CI01000321_03739229_03740955.mRNA mRNA downstream 62225 3739229 ~ 3740990 (+) True CI01000321_03739229_03740955
CI01000321_03749658_03759359.mRNA mRNA downstream 72654 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
TU524456 other upstream 2851577 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3247399 426083 ~ 427025 (+) True G456774
TU525588 other downstream 112314 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 329622 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 329659 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 808393 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 838530 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile