RNA id: CI01000321_03795430_03804685.mRNA



Basic Information


Item Value
RNA id CI01000321_03795430_03804685.mRNA
length 1985
RNA type mRNA
GC content 0.55
exon number 6
gene id CI01000321_03795430_03804685
representative False

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3792915 ~ 3805511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATATTGCCACACTGACTTGCAACTTTTGATAGACGTCAGCTTTTTGTAGGCCTCAGAAGTCTTTTGTACAAAGGCTTCACATTTTTTCATCTTTGATTAAAAAAAAAAACATCCCCTATATCAAGATGCCACCCGCTGCCATCTTGCTTTTCTTTCTGTTCTGCCCTGTGGTCTCCACAGTGACTATTACCTCGGAACGCTCCTCAGTGAATGGGGGGCCGGTGTTGCTTCTGTTGCGAGGACGCGGCCGCAAGGTCCCTCAGCCCGACATGCGGGACAAAGAGGCCGCTGCCATGGCGGCAGAGCCAGAGGCAGCCGAAATCCCTCCGAAACCCTTGCCGCAGATTATGCTACCCCGCAATGTGACGGCCGATGCCCTGAAGCCTCCGCTGGGAGCTGCACAGGTGGCGCCGCCTCCTCGGCGACTGGTGGACGTGGACGTGTGTCAGGGCTACTACGACGTGATGGGACAGTTTGACAACACTTTCAACTGCACCAAGGGCACCTACATATACTGCTGCGGAACCTGCCATTATCGCTTCTGCTGTGAGCACCAGCGCAGCCGTCTAGACCAAGACTCCTGCACTAATTACCGCTCACCCGAATGGGCCGTCACGACTGGACCCATCACCCAGCCCCCGGTCCGACACGACCCAGATTTCGACCCGCTGCAGCAACAGAACAACAGCACGGCTTACGTCATTGGGGGAGTCATCTCTTTTACCATGGCTGTGGCCATTGGGATTAAAGTGGCCTTCCATAAACTTTCTCGACGACCGAGGAATAGAGACATCAACATGCCTAGAGCGCTGGTGGACATTCTGCGTCACCAGTCTAGTCCAGTCCAGCAAGGAGAGAGGAACAACAGCACGGTCCTAACAACCGCCACATCCAGCGAGGGCACACTGGGGCGGCCATTGAAAAACTTCTACACTCCCGTCCTCCAGAGCAAAGATAACCGGACTGGGAAACACAGTTTTGGACAGACTGGGTCCAGTCCTAAACACACAACTACTATCGAGCGAGTTCCACGCATGAACAACACCCAGCTGGCCTCGACAGGAACACTGCTGTCCAGCAAGCACAACAATTCTGGTTTTCACCCCTCCTTCTCTCACTCCTTCCACAACCTTGCCCAGCTACCTCCATCATACGAGACCGTCATGAAACCAGAGCTCAACCGCTACAGCTCCCTCAAGAGACTAGAAAAAAACCTGGATGAATATTCTGGATATTACACCTCCAAGCGAAGGCCAAACAACGCTCCACCCAGTTTCCACTCCTCCCAGCACCACCTGCCCTGGGGCGGTGACTTCACACTGGGTGCCAGGGGAACCCTACCGCTAAACATGTCCCGTACGCGCATCCATGTGTCCAGTTCCACTTCCACCCCCAACCCCTACCCTTTACCCCAGACGCAGTACAACCCCACGTTCGACACGATGAGTAAACCGCCTCGCCGGGTGATGTCCCAAGACCAGCTTCTGGCGCTGGGGGAGGGGAATACTCTCTCACGCCTCTCCAAGAACCAGCAGCATCAGTATTACAAACCCATGACCACCAGCAAGAGCTCCAACACCCAGACTTTGCGCAAGTCTCACGAACGCCTCCTGGTGTCGCCAGACCGCCTGGAGGAGCGAATGATGGCCGATTATGGCGGGATGGTGCCCACCTCATCTCGTCTCACCCATCACCAGAAAGCGCAATCCCAGCAGAACGTGTGCGTGACGCCCTCGCTTGACCGCCATCACATGATCAAAATGAATTCGCACCCTACCTCCGGCCGCGAGCAAGACCACTCGGTCGCCGCAATGTCGTCCGGTCATGGGGCTGGGACTTTGGGATGGGGGGAGCTGTCTCCACATCAAATGGACACTGTTGTGGTGGAATGTCTGAGAACGACCTGGCTGAGCAAGATTATTGGGCCATAATATAGTATTTTAGATCACTCTGCAATGTTTAAGCTTTTATTAACTTGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU525606 lncRNA upstream 56708 3736446 ~ 3738593 (+) True G457874
TU525603 lncRNA upstream 63191 3722749 ~ 3732110 (+) True G457872
TU525590 lncRNA upstream 99096 3692881 ~ 3696205 (+) True G457859
TU525569 lncRNA upstream 159821 3631777 ~ 3635480 (+) True G457842
TU525506 lncRNA upstream 223174 3567989 ~ 3572127 (+) True G457797
TU525610 lncRNA downstream 33572 3838307 ~ 3838532 (+) True G457878
TU527061 lncRNA downstream 294286 4099021 ~ 4102339 (+) True G459126
TU527121 lncRNA downstream 431769 4236504 ~ 4236726 (+) True G459178
TU527123 lncRNA downstream 443871 4248606 ~ 4248923 (+) True G459180
TU527124 lncRNA downstream 444334 4249069 ~ 4249296 (+) True G459181
CI01000321_03767896_03783640.mRNA mRNA upstream 11375 3767896 ~ 3783926 (+) True CI01000321_03767896_03783640
CI01000321_03749658_03759359.mRNA mRNA upstream 35656 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
CI01000321_03739229_03740955.mRNA mRNA upstream 54311 3739229 ~ 3740990 (+) True CI01000321_03739229_03740955
CI01000321_03714795_03718845.mRNA mRNA upstream 76216 3714476 ~ 3719085 (+) True CI01000321_03714795_03718845
CI01000321_03702229_03709660.mRNA mRNA upstream 85493 3702088 ~ 3709808 (+) True CI01000321_03702229_03709660
CI01000321_03811184_03815473.mRNA mRNA downstream 5560 3810295 ~ 3815631 (+) True CI01000321_03811184_03815473
CI01000321_03820289_03828024.mRNA mRNA downstream 15389 3820124 ~ 3828772 (+) True CI01000321_03820289_03828024
CI01000321_03898978_03936261.mRNA mRNA downstream 94243 3898978 ~ 3936261 (+) True CI01000321_03898978_03936261
CI01000321_03937712_03954703.mRNA mRNA downstream 132697 3937432 ~ 3955589 (+) True CI01000321_03937712_03954703
CI01000321_03981145_03984891.mRNA mRNA downstream 176410 3981145 ~ 3984984 (+) True CI01000321_03981145_03984891
TU524456 other upstream 2972454 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3368276 426083 ~ 427025 (+) True G456774
TU527032 other downstream 201891 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 201928 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 680662 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 710799 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953
TU527167 other downstream 942677 4747412 ~ 4747464 (+) True G459223

Expression Profile