RNA id: CI01000321_04694693_04706830.mRNA


Basic Information

Item Value
RNA id CI01000321_04694693_04706830.mRNA
length 2153
RNA type mRNA
GC content 0.49
exon number 11
gene id CI01000321_04694693_04706830
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4694565 ~ 4707157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTTACCCTAGTAATATTCTAGCCTCTATCATCATATCAAACTTTTTATTATTTGCTATGGTAAAAACCCTAGTAATTGCAGCTTCTTCCATGCAACTGTCTTTCAGCTATGCCTTGTAAACGTACTGTTACAGGATATCCTCTTACATAATCCACCAAAACAAACTTGACAACATCCACAGAGGCCCTCCGGCCTACTCTAAAGACACTGGACACAGTCTGTGAAAGTGAAAGAAGTCTTGTGATGGTTGGGCGGGTCACGCGTATTTCTGGCTTGTTGTTTTGAAGGCCTCCGGGAGGAGAGGGGGTGAAAAAACGAATTAAAGATGGCGGAAAACGAAGGAGATGAGACTGCTCGGCCCGCTCCTCCGTCACTGCTACCCACAGCGCCCCGCGTTAACGGATCGGGGATGGTCGGTTCTGGTAGTCAAACCCCGACCTTGGTGACTTCAGGTCCGCGGGTGGTTCGGATCATAAAGTCAGAATCGGGATACGGATTCAACGTCCGCGGTCAAGTGAGTGAAGGCGGCCAGCTGCGGAGCATTAACGGGGAGCTGTACGCTCCTCTCCAGCATGTCAGCGCCGTGCTACCCGGTGGTGCGGCGGACCGGGCCGGTATCGTGAAAGGAGACCGAATACTAGAGGTTAACGGGGTGAGCGTGGAGGGGGCGACGCACAAGCAGGTGGTGGATCTGATCAGGGCCGGAGAGAGGGAGCTGGTGTTGACCGTGCTCTCCGTCCCGGCACAGGAAGGGGACGGACTTGATGTCGGTGAAGAAGGTGCGGTGCAGCCCAATTACGACTACAGTGACAAGCAGGCCGTCCCCATTTCAGTCCCCACATACAAACATGTGGAACAGCACTCAGAGAAGTTTGTGGTGTATAACGTGTACATGTCGGGCAGACAGATGTGCTCAAAGCGTTATCGGGAGTTCGCAATACTTCATCAGAACCTGAAGAGAGAGTTTTCCAACTACACTTTCCCAAAGCTGCCAGGGAAGTGGCCCTTTTCTCTGTCCGAACAACAGCTAGACGCTCGCAGGAGGGGATTGGAGGAATACCTGGAGAGAGCGACACTGTTTAACATGTGTTTCATGTTAAAGAACCACAACAGCATAACGGATGTCGAGTTAAGAATAGCGCTGCCTGATAAAACCACAGCTTCAGTAAGAGTCCGAAAGAATAGCACCACTGACCAGGTTTACCAGGCTCTTGTTGTGAAAGTTGGGATGGACAGCATCATGGCCAGTTACTTTGCTCTCTTCGAAGTTATTAACCACTCATTTGTGCGAAAATTGGCTCCTAATGAGTTTCCGCACAAGCTGTATGTTCAGAACTACACGTCAGCTGTCCCCGGGACGTGTCTCACAGTGCGTAAGTGGCTCTTCAGCACACAGGAAGAGGAACTGCTGCGGGACAACCCACTGGCCCTGCACTACTGCTTCCATCAGGCACAGGATGATGTGAAGAAGGGATTCATTAAAGCAGAGGATAAAGCATACCAGCTGCAAAAACTAGCAGAACAGAAAAAGATGACAACGTATCTGAGTCTTTTGCGCTCATGTGAGGGATATAACGAGGTGACTTTCCCTCACTGTGCATGTGACTCACGGCGGAAAGGTCATGTGATCACGGCCATCAGCATGAAGCATTTCAAACTACACGCCTGCACAGAGGACGGCAGTCTTGAGAATCAGGTGATTGTGTTCGAATGGTCAGAGATGCAAAGATGGGACACAGATGAGGAGGGTATGGCCTTCTGCTTTGAGTATGTGCGGGGAGAAAAGAAACCTCGCTGGGTCAAAATATTCACTCCTTATTTTAACTACATGCATGAGTGCTTTGAGAGGATTTTCTGTGAGCTCAAATGGAGGAAAGAGGTTGAAGAGGAGGCCTCAGACAAAGGCAATAAGAACTGTAGTAATAATGGTAAGAGAACCTTTTGCCCTCATTTTATCACACTTAAGTTAATGGGATTTTTCCAAGCATACTCATGTGATGGCTACACTCACACAGAAACCTGAAATACTGGTTCATACTTACCACACTTGCATTCAAGTATGAGTACAAAATCACATGTCATGCGTGTGATGCTCATTTGAGCAATCAGTGCATAAAATGAACCCTGCACCTTCTCGAAAGATCAAATAAT

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17936 SNX27; sorting nexin-27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527600 lncRNA downstream 51956 4642303 ~ 4642609 (-) True G459598
TU527381 lncRNA downstream 54450 4634865 ~ 4640115 (-) False G459403
TU527379 lncRNA downstream 54450 4635326 ~ 4640115 (-) False G459403
TU527382 lncRNA downstream 54450 4635326 ~ 4640115 (-) False G459403
TU527383 lncRNA downstream 54450 4635326 ~ 4640115 (-) True G459403
TU527616 lncRNA upstream 5117 4712274 ~ 4716814 (-) True G459612
TU527655 lncRNA upstream 91338 4798495 ~ 4798774 (-) True G459645
TU527780 lncRNA upstream 227462 4934619 ~ 4935681 (-) True G459764
TU527833 lncRNA upstream 322822 5029979 ~ 5030313 (-) True G459807
TU527911 lncRNA upstream 446300 5157089 ~ 5157176 (-) True G459883
CI01000321_04514194_04514490.mRNA mRNA downstream 180075 4514044 ~ 4514490 (-) True CI01000321_04514194_04514490
CI01000321_04510676_04512993.mRNA mRNA downstream 180997 4510361 ~ 4513568 (-) True CI01000321_04510676_04512993
CI01000321_04496126_04503083.mRNA mRNA downstream 191482 4495451 ~ 4503083 (-) True CI01000321_04496126_04503083
CI01000321_04483181_04491284.mRNA mRNA downstream 203281 4483120 ~ 4491284 (-) True CI01000321_04483181_04491284
CI01000321_04444212_04473051.mRNA mRNA downstream 221514 4444194 ~ 4473051 (-) True CI01000321_04444212_04473051
CI01000321_04710611_04711031.mRNA mRNA upstream 3295 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04767177_04772703.mRNA mRNA upstream 59805 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04864287_04872091.mRNA mRNA upstream 156788 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04965389_04968595.mRNA mRNA upstream 256722 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
CI01000321_05078234_05124375.mRNA mRNA upstream 370735 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
TU526931 other downstream 878170 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 956580 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1027566 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1205031 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1602638 3088115 ~ 3091927 (-) True G458802
TU527829 other upstream 311809 5018966 ~ 5025886 (-) True G459803

Expression Profile