RNA id: TCONS_00001584


Basic Information

Item Value
RNA id TCONS_00001584
length 951
lncRNA type retained_intron
GC content 0.37
exon number 3
gene id XLOC_000999
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8539671 ~ 8553298 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttttaaaattatttgttacTTAAGAATATAATGCTTTTTCTATGTCTTCATTTAAAGGTGTAAATTCCTTCAAGAGTATGGAGGTGCTGAAGTTTGCACTGAGGGTTCTGGACTGCAACAGCACTGTTTTTGCAGATGtaagtataaaatgtatatacataaaaCACCAAAGTGAATTAAGAAGTGATTTTTGCAGAAAAGAGCGTTATTTGAAAGCCCCAAATCATGCTTGTGACCCAaaaggattttatttttttttttaaattaacatttttatttaattagtttttcttttgtattgtGTCAGGGGCAGCATCAAAACATGTTGTGATACATCTATGGATTTTGCTGGTATAGGATTCTGATGGAAATCTACTGGAGATACTGCTCTCCTTAAAAACATAACTAGAAAAttgtacacataccttagaaacGGTATCGCATAATTTTGTCAGTTTTAAAACTTGACTTTTCAAatccacggtataccttgaaactggttatcgtcccatgctaGATGCATCAACCCATTATAATTTAATTGATTAACTCTTCATGTGTGTTAAAGACTGTCTGTCAGCATGAACCCTAATTATCTCTTCAGATCTGCTGCCTTTTTTTATAACAGAAGGTccgtttgtttttttgtttttagccgGAATGCTGGGTGTATCTGCTCAGCGTTGTCAGTTCCAGCTTTATTACTCCAGAAGGACTGGTTGTTGGTGCATTGTTTGCCGAGCCTGACATCAACTTTCAAACGGTGACCAGAAAGGCTGCCAATGCAATTCTCGAGGAGCTGACAAGTACATCGCGCATACAGGTCCCCAAAACATTTGATATTGGTTATCCTGACCAAGCTAGACTGCTGTTGGCCGTTCAGGCTTTGACACTGCGTATATTCCACTCACAACTCCGCCCCATCCTTGGTGTCATCACTGTTTTTAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-1 No description available

Ensembl:

ensembl_id ENSDART00000146333

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001583 lncRNA downstream 76 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001581 lncRNA downstream 33621 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00003332 lncRNA downstream 35998 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00003331 lncRNA downstream 338459 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00002916 lncRNA downstream 622993 7919319 ~ 7920694 (-) False XLOC_000984
TCONS_00001586 lncRNA upstream 4658 8550017 ~ 8553298 (-) False XLOC_000999
TCONS_00003333 lncRNA upstream 33796 8579155 ~ 8587357 (-) False XLOC_001001
TCONS_00003334 lncRNA upstream 33796 8579155 ~ 8587359 (-) True XLOC_001001
TCONS_00002917 lncRNA upstream 67216 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00001589 lncRNA upstream 70176 8615535 ~ 8618644 (-) False XLOC_001002
TCONS_00001579 mRNA downstream 114926 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001580 mRNA downstream 114951 8422092 ~ 8428736 (-) True XLOC_000997
TCONS_00001578 mRNA downstream 351269 8165340 ~ 8192418 (-) True XLOC_000995
TCONS_00001577 mRNA downstream 402552 8134944 ~ 8141135 (-) True XLOC_000994
TCONS_00001576 mRNA downstream 402924 8127675 ~ 8140763 (-) False XLOC_000994
TCONS_00001585 mRNA upstream 4490 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001588 mRNA upstream 9964 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001591 mRNA upstream 92803 8638162 ~ 8646941 (-) True XLOC_001003
TCONS_00001592 mRNA upstream 103740 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001593 mRNA upstream 104545 8649904 ~ 8651718 (-) False XLOC_001004
TCONS_00001570 other downstream 567918 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 623481 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 624120 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 624805 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 742041 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001587 other upstream 7391 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 104750 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 572741 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 652500 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 914651 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

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