RNA id: CI01000321_04965389_04968595.mRNA



Basic Information


Item Value
RNA id CI01000321_04965389_04968595.mRNA
length 2626
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000321_04965389_04968595
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4963879 ~ 4969345 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAATTATTTACGTTTACCGAATCATTAAAAATACACGGGTCTTATTAGATGAGTGGGCGGTAGGGGCGTGGCCAGAACTCGGGCAACCGCAACCTGTCAATCATATACTGTGGCGGGAGCAAAAAACGAGTGTCAGAGAGGATGCCTAGGCTATGATTGCCTTACTTTTCCTGTTACTGGCATCGTGTGTGCGTTTGGACAAAAACCCACAGTAAACGCTTAGAGGGATCTAACAAAAGCTCACAGAAGTTCAGTGACCGCAAAATATGACTGTATGAGTTGACAGAATCGTTTTTTTTCTTTTTACACTTATTGAGTGTTTTTTTTTTTTTTTTTCTTCGACGCTTGTCACCTAACCAAAGAGACACCTGCCGCTGAAGAGCTACTCCTTTTTGTAATCTCAACCGACAGTTTCTCGTATCATTTTTCTTCTCTTGTGGAGGATTTTGTCTCAGAAAGGAATTATTCAGTAACTTGTTCCAGTAAATTCCAACAGACCTGCTCAGGATGCCTTGGATGAGCGTCTCTCTGCCATGGAGTTGCATTCGGGAAAGCGCGAAGCTCTGTGACTGAACAAACTAGCCGTACTGCGGCACGGCTTCGCAAAATAAACGCTTTGCTACTGTCTGACCACTTGCTGAGTCGCAGGAATGTTGTAAAAACCGCTAGTTTTGCGTTGGACTGGGGGACTGAGAGTCGAAGAAGGTGAAGAGACCACAGCAGGTGCACGTGAACGCAGGAATATTATAATGGCTCTCGCGGCGGTTTCCCTCTACCTTCTTGCGCTTGCCTGGATGAACTTGCGCCCGGTCCACGCGAACAACCGCCACGCTGTGTACTGGAACAGCTCAAACATCCAAACTCAGTGTCAGGGTGTTTGTACCTACATGTCTCTGTTAGTACAGAGTCTATTTCTACTCCCACACTGGGAGAAGATCTGTAAAATAATGCGTAAACTGACCCAGATTGCAGTGAGCCTAACTCTTGGTCCAGCTGAGGTAGACGAGTTAGCGGTGGAGCCGGTAGAGTGCTTTATGTGGGCTAACGTAACCGGGATCACTCTCACTCCGCATCCTGGCACTCACATCGCCGAGACAGATAAAAGAGCAGACTGATAAAAGCGCTTTCATGGATGCGGCGAGAAAACCTTGCTCACGGAGTCTGTTTGAAATCTCACTGTAAAGTCAAGTGAATAGAGGATCATCAATCATGTGAGATGATGCGTCTGGGGAAAATGCCAATTCTGGAAGAAGTCAGAAAGAACGCGACTGCTGGTGTAATATGACAGAAATTCGCATGAAGTGCTTCAGATATATGTAAACAACTGAAACAGACATTTATAGGTAGGGGTGGGCGACATGGCAAAAATATCACAGCACAATTTTTTTTTCAGGAAAATCACGATTCGCGATTTTATTACGATTTTTTCATGTTTATTTCACTATTTCGCAAGTGACTGAGCAGGACAGCCAAACTAATTTTCCTGTTTTAAAAATGTTGCCTAACAAGGTAACAAAATATAAAAGAAAAAAGAATGACAGACCATTTAGGCCGAAGTCGGGGTGAACGAAGATAAAATATTTCTTTTATTATTTTATCTATAATATACAAATGAAATAAATTGTGCTTTATTTTTTTCAGTAGGTGTAATAACAGTAGTATTCAAGAAATTGAATAAACAAATGTAAAAACAAAATACTAGAGTTCACTGAATAAATTATATACACTAATTCTTATTAAAGATACTGAAGTTATTCAGTGAAAAGCAGTAAGTGATTTTCTCTTTGTTTTTTGTTGTTTGATTAACATTAATGACAAGCAGCAGCAAATTTATTAGGCTGCTGTCACTTTAAGACCATGCACGGATCTAATATACAGTTAACTTTCACTTAAAACATAATCAACTGTATTTATTTAAACCTTTTTTGACAGTTTCAGCGCAATAAGACGGGAAAGATAACGTAGTTCAGTACTCACATGCTGTTTGACAGGCTTTTAGTGTGCACGCTCAGAAAAGCGCATGTCAGAACAGTGTGCGAATAAACTGTTTAACCGACAAGGCTTTAAACACAAATTAACTTTCATGATTGTGAATAACTGCAATGTCATATGAGCTATAGTCATGTGATGTAAATGTACGTCGCATTGTACAGCATGTTGGGACAAAGGCGCCAGAACTTGCACTGTGGCACGATACTACGATATTCCTTAAAAAGCAGATCGTGGAGGCATTTGAATCATCCACGATTAAAAATCGTGATATTGCACACCCCTATGTATAGGGTGTTGATTCGGATGGTGAGGATGAGTCAGTAGCACACGGCTGGGCTTTGATTGCATCTGCACGGCCCCATTAGGAGGCAACGCTCTCAGCTTTTGCTGGCACTGGCACTGCAACCCAAGCTCATTACAGCTGTCCCAGCTAATGGAACACACACTCACACACAAAGTCATTTAGTTGCGTTTTGTCCAACGCACACGCAAAGTCCCTTGCAAACAAGTATGCATACTAATGTACTTTATGCGGATCAAACTGACTTGTAAGCCGAATGAGAAGAACATTCATGCACACGAGTGACAGGAAAAATCCAACCTTTTTACACACACACACACTCACACATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU527780 lncRNA downstream 28198 4934619 ~ 4935681 (-) True G459764
TU527655 lncRNA downstream 165105 4798495 ~ 4798774 (-) True G459645
TU527613 lncRNA downstream 214298 4701479 ~ 4749581 (-) True G459610
TU527616 lncRNA downstream 247065 4712274 ~ 4716814 (-) True G459612
TU527600 lncRNA downstream 321270 4642303 ~ 4642609 (-) True G459598
TU527833 lncRNA upstream 60634 5029979 ~ 5030313 (-) True G459807
TU527911 lncRNA upstream 184112 5157089 ~ 5157176 (-) True G459883
TU527950 lncRNA upstream 216999 5186344 ~ 5186707 (-) True G459919
CI01000321_04864287_04872091.mRNA mRNA downstream 91788 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04767177_04772703.mRNA mRNA downstream 191176 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04710611_04711031.mRNA mRNA downstream 252495 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04694693_04706830.mRNA mRNA downstream 256722 4694565 ~ 4707157 (-) True CI01000321_04694693_04706830
CI01000321_04514194_04514490.mRNA mRNA downstream 449389 4514044 ~ 4514490 (-) True CI01000321_04514194_04514490
CI01000321_05078234_05124375.mRNA mRNA upstream 108547 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
CI01000321_05141500_05146892.mRNA mRNA upstream 171665 5141010 ~ 5148412 (-) True CI01000321_05141500_05146892
CI01000321_05151190_05175511.mRNA mRNA upstream 180966 5150311 ~ 5175511 (-) False CI01000321_05151190_05175511
TU526931 other downstream 1147484 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 1225894 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1296880 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1474345 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1871952 3088115 ~ 3091927 (-) True G458802
TU527829 other upstream 49621 5018966 ~ 5025886 (-) True G459803

Expression Profile