RNA id: CI01000321_05141500_05146892.mRNA


Basic Information

Item Value
RNA id CI01000321_05141500_05146892.mRNA
length 3744
RNA type mRNA
GC content 0.37
exon number 10
gene id CI01000321_05141500_05146892
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 5141010 ~ 5148412 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATGCAAACTCTTGTGTCCCCTTATTAACATTTCCATATGTGAGTCAATAACAAAACTACTGCTGCCGATGTTCATCAAACAGAGCCGAGAGGTTTGGTAAATTAACCATTGTACAGATAACTAGCAATCAAGTTTTATTTTAACATTTATCATTTCTACACACTAAACGAAAAACCAAACAAAAATGGACAACTGCCAGTGACTCTTGCATCAAAACCTCATCCAGATATGGTCACTATATATTGACCTAATGATAAAAACTCTTAATTTTTGTGCTAAAGAATATTATAGAATAAAATAAAACACATGCAAATAAATACATACTACATACATAATAAATACATACTACTGATTTTACAATTATTCTTATTCTCATTCCATTTGCTTAATGCATGAATAAGTCCACACCTGTAACATGTGACTGTTGTATACAGAGAACACGACAACGGAGACGGAGAACATTCAGGAGCAAAACAGTCCATGGGGGAGTGGAGGGAGGGAGGAGCCATGGTGGAGAAAACATTATGAACAAAACATAATCCTGACAACACACAAAGGTGAACCAGATAACCTTATTCTGAAATCTTACTCTGCTTGACTTGACAGCTGAATCAACGTCAGTCTACTGTCCCACACATTATCCTGAGATAAAAGGTAACATTTCCTTCAAATTATTATGATGCTTAAAGTTAACTAAAATTCTAAAACGTAGTTGTCTAAAAATGTATTTTGTCCTTTTATAGACTCACAACAGTCCAAAGAAATACACAATAGTATTGTTGTTTAATTTATCTATCAAACATTTAACAAAGCAAGGAAGGCACCCATGTAGAGTTTTAAAAAAGCTATTATTAAAAGAGCTATAACATTAAAAACCATTATTTAGTTGTTGTTTTTTTCCTTCCATTTCTGCAACGTGATCTTGTGAGAATTCCTTTTTATTTTACGTAAAGTATTTTATGTAAAGTGTGGATCTACCACACATACAATTACTTTTATATTTGGACAGTAGACTGGAATAAGATTATCAGTGACTAACAACTTAAATTTAGCTATGTACCTCATTCAAAAATACTGTATACTGCCAGAGAGCACTGTGAATGCATTTCCTTTATACTGTATAAATTAAAAAATTGTTTAATGTTAGGTTTAGAGGTAGGAGTGGGATTAGCTTCTCAAAAATATCTATTTAATGTTATAATGCAACAATACTGTACCATGTATATTTTACTGAACCTGTTACATTTTATTTATTCATTTTATACTCAATAAAAGTGGTTATGTTGAGGGATTGCGTAGGGTTTAGGGTCTAAAATAAATCAATAAAATGGTAGGAAAAAAATAAAAAAACTATACCATGGGTTCTGTTAGAATCTTAACACCTTGTTAAGCAGAAAGTGGCAATTGTGGGAAATACAGATACATGATAACTTTTTTTCCTTACTCACGACTCAAAATTACAAAGACAGGGAATACAACAATAGGAAACTAATTTTTTAGATCTTTTGACAGATGAGATGGGTTCATCACTGTGTGAAGAAAGCTCACATGCGGTCAGTGAGGTTGACATTGTGTCAGCTGTACATTCTCTTCAAGTGTCAGACACACCGAGACCAGACGGCATCCCAGTTTCCTTTTATAAAGACGGCATCCAAGTTTCCTTCTATAAAGACAGCATCCCAGTTTCCTTCTATAAAGACAACATTCAGGATCTAATTCCATATATAAAGACACTCTATGACAGAATCCACAGAGATTTCCTTATTGTGAAAAACCTTCTCAGAGATGCACCAGAAGCAGATACTGAATCTGTAGAAGTTTTAATTGAGAGAGACAAACTGCTGGATCAGGGCTGCCCTTTGACCCCAGTTCTCATTACACTGGCTCTGAAATGCTTTGTTTCTGCATTAACTGGGCATTTAAAACAGAATGATATTCTGGTTTTCAAAGAAAGTGTGATACTTTGCATCCAACCTGAGGACCTTGAGGAAGTAATAGCTGCTGTGAGAAACAGAGATAATGAAGTGTACTACATTAAGGAATTATCCAAAGGAAATGTTAATGAGGAAAAATCAGAAGCCAGTTGGTCTAAAACAGACAAAGACAATACAGAGAGGAGATTGTGTGAAGAGCGTGATATTTGGTCTATTATAAATGAGGAAAAAGACATTTTGATAGAGGGTGATGGAAGACAGACAATGTATGCAGTTGTTACCTTGCAAGACTCAGATGAGGTGATGGTGGCACCATCACACTGGTTGAGCACAGACAAGAAACAAAGTTACTGGCCCCCATTCAAATCACCAGAGAAGTGCATGGAAGCTGTTCAGAACAGAGTTAAACCTGAAACAGGAGGGAAAACATGGGAGAAACTGAATATTAGCTTTCACAAGGAATCTGTCTCTTTTGATAAGGCAAAAGAGGGGCAAAAAGAAATTACAGAACAGAAAGAACGATCTTTTCTATTAGCCACTGGATTCCCTGGAATACTACAAAGACAAAGACCTCTTCCTACACCATCTACATCCAGAATGCCAGCTGACGACAAGGACGATCTCCTCCAAATGCTGAGAGACATCAAGAGCACGGTTCAGGAAAACTCTGCCATGTTAAAGAAACTACTGAAAGAGAATACGGCCTCTGAATCCCCCAGCAGTACCAGCTTGCCCAATAAAGATATTAAAACAATCCCAAATCTGCCTCTTAGAACCTTTGAAGATGTGGTCAGGACTGAAATGGAGCTCACTAATGCAACAACACGGCAAAAATATTTAAAATATCTGTCAAGGCTTGGAGGTTTTGGGGCCAAGGATGTGATTAAGAATATTATGCAGCAAGTCCTAACAGATGATCTGGCTATGGAGTTCAACTGGCAGGGGAGAGGAGAGAAAAAGGCCTTCTCTAGGCTTATTTTAACAGATGTAATCCGAGATGCTGCATCAAAGCAGAGTGTGTTGAGGGCAGACTGTGAAGCTGAAATAAAAGCTTATCTGTGGCACAGAATTAATCAAATCGGTCGGAAGAGACCAAGAGTTTGTGAAGCAGAGAGTCTTGTGACTGGTTGTCAAGCCAGCCAATCAGAATGTAGCAGCCTCATCTCTGTTTGGCTGGAATTATGGCATATTGAAATGCTCTGTTGTGTTGAGCAAGCGAGCCGTCGGCGATTAGAGAGCACTCAGCATGGGTATCAGGAGACCAAGCAAGTGAAACGTTTCACACGCGAAAGAGAACGTCCGCGCACATCCAAATAAACTTCTTTTAAATGCAAAATTAATTTTTCGTTCGCTCGAAATACTTTTTTATTTGCGAGAACAACATTTCTCCGCAAAACTCAGTTCACGTGCATGCGAAATGCCCTTTTGCGTGCTCAAAATATGATCTTGCACACGCAGAATTGTGGCAGAAACGTAACCCCATACCAACAACAATAATAGTTAAAATAATATGAACATAGGCGTAATTTGTGGGTGGGGTGGGGGTGGGATATGTCCCCACTTTTTACAAGGGTCGATGTTGTCCCTACCACTTTTTGAAACATCTCATCTAAACATCATGTATCTAATACAAAAAACAAACAAACATAAACGTGTCCCTCCCTGCTTTAGATATACAATCACTGATGAACATCTTTGGTTTTAATGAGGAAGGGAAAAAAAGTTATATGAGGGCAGATTTCAACCCAGAACCTCTGGCACGTTTAATAAAAGTTCTACCTCTAGAGTTTCTGATTGGGCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527833 lncRNA downstream 110697 5029979 ~ 5030313 (-) True G459807
TU527780 lncRNA downstream 205329 4934619 ~ 4935681 (-) True G459764
TU527655 lncRNA downstream 342236 4798495 ~ 4798774 (-) True G459645
TU527613 lncRNA downstream 391429 4701479 ~ 4749581 (-) True G459610
TU527911 lncRNA upstream 5045 5157089 ~ 5157176 (-) True G459883
TU527950 lncRNA upstream 37932 5186344 ~ 5186707 (-) True G459919
CI01000321_05078234_05124375.mRNA mRNA downstream 16573 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
CI01000321_04965389_04968595.mRNA mRNA downstream 171665 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
CI01000321_04864287_04872091.mRNA mRNA downstream 268919 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04767177_04772703.mRNA mRNA downstream 368307 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04710611_04711031.mRNA mRNA downstream 429626 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_05151190_05175511.mRNA mRNA upstream 1899 5150311 ~ 5175511 (-) False CI01000321_05151190_05175511
TU527829 other downstream 115124 5018966 ~ 5025886 (-) True G459803
TU526931 other downstream 1324615 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 1403025 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1474011 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1651476 3471881 ~ 3489534 (-) True G458859

Expression Profile