Item | Value |
---|---|
RNA id | TU524056 |
length | 212 |
lncRNA type | inter_gene |
GC content | 0.48 |
exon number | 1 |
gene id | G456514 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000321 |
NCBI id | null |
chromosome length | 5206101 |
location | 24277 ~ 24488 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU524046 | lncRNA | upstream | 9902 | 13869 ~ 14375 (+) | True | G456508 |
TU524067 | lncRNA | downstream | 9637 | 34125 ~ 35616 (+) | True | G456525 |
TU524079 | lncRNA | downstream | 36376 | 60864 ~ 61095 (+) | True | G456537 |
TU524081 | lncRNA | downstream | 37870 | 62358 ~ 62561 (+) | True | G456539 |
TU524050 | lncRNA | downstream | 61270 | 85758 ~ 90935 (+) | True | G456509 |
TU524052 | lncRNA | downstream | 81465 | 105953 ~ 125908 (+) | True | G456510 |
CI01000321_00098493_00100489.mRNA | mRNA | downstream | 73808 | 98296 ~ 100586 (+) | True | CI01000321_00098493_00100489 |
CI01000321_00150756_00152124.mRNA | mRNA | downstream | 126268 | 150756 ~ 152189 (+) | True | CI01000321_00150756_00152124 |
CI01000321_00283589_00284224.mRNA | mRNA | downstream | 258836 | 283324 ~ 284337 (+) | True | CI01000321_00283589_00284224 |
CI01000321_00326486_00355049.mRNA | mRNA | downstream | 301905 | 326393 ~ 355202 (+) | True | CI01000321_00326486_00355049 |
CI01000321_00441382_00448773.mRNA | mRNA | downstream | 416894 | 441382 ~ 448780 (+) | True | CI01000321_00441382_00448773 |
TU524336 | other | downstream | 401595 | 426083 ~ 427025 (+) | True | G456774 |
TU524456 | other | downstream | 793976 | 818464 ~ 822847 (+) | True | G456881 |
TU525588 | other | downstream | 3764830 | 3789318 ~ 3789972 (+) | True | G457857 |
TU527032 | other | downstream | 3982138 | 4006626 ~ 4009532 (+) | False | G459103 |
TU527033 | other | downstream | 3982175 | 4006663 ~ 4009532 (+) | True | G459103 |