RNA id: TU524056



Basic Information


Item Value
RNA id TU524056
length 212
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G456514
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 24277 ~ 24488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATGTAGTGTGTCTGGACCGGTCACTCTCTCTCACACACACAAGGACCACACGACCACTTGATGAGATTCAGCACTGTAATTAAGGGAAATAATCAGTGGAGCAACGGGGCGACAGCTTCTCCCACTCTGGTACACACAGGATATTTTTTTGGGGAGAAGCGAAAATCATATGCGTCATCGGCCTCATACACAACTAGACTGAGGCAATCG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524046 lncRNA upstream 9902 13869 ~ 14375 (+) True G456508
TU524067 lncRNA downstream 9637 34125 ~ 35616 (+) True G456525
TU524079 lncRNA downstream 36376 60864 ~ 61095 (+) True G456537
TU524081 lncRNA downstream 37870 62358 ~ 62561 (+) True G456539
TU524050 lncRNA downstream 61270 85758 ~ 90935 (+) True G456509
TU524052 lncRNA downstream 81465 105953 ~ 125908 (+) True G456510
CI01000321_00098493_00100489.mRNA mRNA downstream 73808 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00150756_00152124.mRNA mRNA downstream 126268 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00283589_00284224.mRNA mRNA downstream 258836 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 301905 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 416894 441382 ~ 448780 (+) True CI01000321_00441382_00448773
TU524336 other downstream 401595 426083 ~ 427025 (+) True G456774
TU524456 other downstream 793976 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3764830 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3982138 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3982175 4006663 ~ 4009532 (+) True G459103

Expression Profile