RNA id: TU524067


Basic Information

Item Value
RNA id TU524067
length 1443
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G456525
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 34125 ~ 35616 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGGCTTTAATAAGGGAAATAACTATAACGACATGCAGCACTGCAAATGGCATGATTTAACTGATGAGAGAAGTAATAAAGGGAAAATAAAACTTCATGGGAGATAAAGAGTTCTTTTGCCACAATTTGCTTGTTTCATTCTCTCACTGATTGGTGGACATTGTTTTTGGAGAATCATACAGTAGGTAATGTAGTTTTTCACCTGGAAGTATGCTGTTAAACACATTAAGAAAAAAACAAAACAAGCTCTCAAGTCTGTACTGCAGGTATTTGGAAATCTAAGCAGCAATTATAATAATAAAACCTGTTAGCATAATTAAACATTAAAGTTCAATTACTTAATATGTATACTTGATTCTCATATACTGTACTGCTTTAACTGTAAGTTAATCTAATGATTTAAAAAAAAGTATTTTTCCTAGATATTTTTTAATAGCATTAGAATACTGTTACCTTGACAAAATAATCTTGTTGTCTCAAAATAACACATTACCACCATGATGTTATCACATTCTCACAAGTGGGCACAGCAAAAACAAACAAACCAAACCCATCCCTTCCAGGTACCTTAATGAACAAGAAATTATTCTATTCTTGTTTTGAGTTGCTACACTACAGTTATGTATATATAACTGGATTTATCCACTGACATGCTGATCTTAATTGGGAAGAAAATCAATTAAATCATAGTTTATGATAACCTTTAATAGTGGAATATACCTACAGAATCCCTATCTTGTAAGCTAGAAAAGTAGTTCTTAACTCTTTCCTCGAGGTTCACTTTCCTGCAGCGTTTAGCTCCAACACTAATTATACACATCACAGGCTTGTGCCATGAAGTTGTTTTAGGTGGCTATAAAGGTGTTTCAGTTTAGTTTGTGCCAACCCTGGGCTTTTGACACCATGCTTATAGCGGTGTTCATCACTATAGTGGCTAACCAGCTCCAGTGCAGGTTATGTTCTAGGTAAAAGATCTGAACTGAAATTGGACCAATCAGCTGTGAGCAAAGTAAAATCTCTGAGGCAATAATGTCACTCTCCTAGTTTTTCTTGCTCCAATTTTTTTATAGGTGAACTATCACTTTAACTGCTCAGTTCCATTGTGAGTGAGCAGTTCATCTGTTGTTTATTTCAAAGCCATTTATTATATTACTCTTATAATATGTGCCCATTCTAAGGATCTTAAGCAGGATGAATACATAACATAAACATATGAAAACAACTGGATAGCTGCAGACTACAGCAAACCAGTTCTAGCTTGACTATACTAGATATCTGTGCCTAAAATCACACACTGAACTGACTGTATAAGAAATGATGTAAACAAAGTATAATAGTTGTGTCTTAATAGTTGGATTTCTTGTTGATGAGAAGGCAGTAGGAGGACAGTGCTCCCCCAAGTTTGGAGGCTTCACTGCAGGCTGTGGGCAGTAGGGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524056 lncRNA upstream 9637 24277 ~ 24488 (+) True G456514
TU524046 lncRNA upstream 19750 13869 ~ 14375 (+) True G456508
TU524079 lncRNA downstream 25248 60864 ~ 61095 (+) True G456537
TU524081 lncRNA downstream 26742 62358 ~ 62561 (+) True G456539
TU524050 lncRNA downstream 50142 85758 ~ 90935 (+) True G456509
TU524052 lncRNA downstream 70337 105953 ~ 125908 (+) True G456510
TU524115 lncRNA downstream 99899 135515 ~ 135725 (+) True G456573
CI01000321_00098493_00100489.mRNA mRNA downstream 62680 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00150756_00152124.mRNA mRNA downstream 115140 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00283589_00284224.mRNA mRNA downstream 247708 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 290777 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 405766 441382 ~ 448780 (+) True CI01000321_00441382_00448773
TU524336 other downstream 390467 426083 ~ 427025 (+) True G456774
TU524456 other downstream 782848 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3753702 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3971010 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3971047 4006663 ~ 4009532 (+) True G459103

Expression Profile