Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU524052 |
| length | 576 |
| lncRNA type | antisense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G456510 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 105953 ~ 125908 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU524050 | lncRNA | upstream | 15018 | 85758 ~ 90935 (+) | True | G456509 |
| TU524081 | lncRNA | upstream | 43392 | 62358 ~ 62561 (+) | True | G456539 |
| TU524079 | lncRNA | upstream | 44858 | 60864 ~ 61095 (+) | True | G456537 |
| TU524067 | lncRNA | upstream | 70337 | 34125 ~ 35616 (+) | True | G456525 |
| TU524056 | lncRNA | upstream | 81465 | 24277 ~ 24488 (+) | True | G456514 |
| TU524115 | lncRNA | downstream | 9607 | 135515 ~ 135725 (+) | True | G456573 |
| TU524125 | lncRNA | downstream | 50475 | 176383 ~ 176794 (+) | True | G456582 |
| TU524126 | lncRNA | downstream | 51888 | 177796 ~ 178392 (+) | True | G456583 |
| TU524132 | lncRNA | downstream | 59724 | 185632 ~ 186342 (+) | True | G456588 |
| TU524133 | lncRNA | downstream | 68319 | 194227 ~ 194486 (+) | True | G456589 |
| CI01000321_00098493_00100489.mRNA | mRNA | upstream | 5367 | 98296 ~ 100586 (+) | True | CI01000321_00098493_00100489 |
| CI01000321_00150756_00152124.mRNA | mRNA | downstream | 24848 | 150756 ~ 152189 (+) | True | CI01000321_00150756_00152124 |
| CI01000321_00283589_00284224.mRNA | mRNA | downstream | 157416 | 283324 ~ 284337 (+) | True | CI01000321_00283589_00284224 |
| CI01000321_00326486_00355049.mRNA | mRNA | downstream | 200485 | 326393 ~ 355202 (+) | True | CI01000321_00326486_00355049 |
| CI01000321_00441382_00448773.mRNA | mRNA | downstream | 315474 | 441382 ~ 448780 (+) | True | CI01000321_00441382_00448773 |
| CI01000321_00511077_00516356.mRNA | mRNA | downstream | 384646 | 510554 ~ 516356 (+) | True | CI01000321_00511077_00516356 |
| TU524336 | other | downstream | 300175 | 426083 ~ 427025 (+) | True | G456774 |
| TU524456 | other | downstream | 692556 | 818464 ~ 822847 (+) | True | G456881 |
| TU525588 | other | downstream | 3663410 | 3789318 ~ 3789972 (+) | True | G457857 |
| TU527032 | other | downstream | 3880718 | 4006626 ~ 4009532 (+) | False | G459103 |
| TU527033 | other | downstream | 3880755 | 4006663 ~ 4009532 (+) | True | G459103 |
