RNA id: TU524115



Basic Information


Item Value
RNA id TU524115
length 211
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G456573
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 135515 ~ 135725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTACCACCTGAGAAACAGCATCAGGGAGTCAAAAACAGTCTACAACCTAGCTGTTAAACTCACAATTGCACCTACACAAGCAAGGGGATAATTGGGCATACGGCCTAAACAACTCCCTCGGGAGGAAGCCAGAACTAGGAACTACACATCCTGAAAGGATAGTAAATACATATGGGGTTACTTCATATACCACACATCACCTAGCTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524052 lncRNA upstream 9607 105953 ~ 125908 (+) True G456510
TU524050 lncRNA upstream 44580 85758 ~ 90935 (+) True G456509
TU524081 lncRNA upstream 72954 62358 ~ 62561 (+) True G456539
TU524079 lncRNA upstream 74420 60864 ~ 61095 (+) True G456537
TU524067 lncRNA upstream 99899 34125 ~ 35616 (+) True G456525
TU524125 lncRNA downstream 40658 176383 ~ 176794 (+) True G456582
TU524126 lncRNA downstream 42071 177796 ~ 178392 (+) True G456583
TU524132 lncRNA downstream 49907 185632 ~ 186342 (+) True G456588
TU524133 lncRNA downstream 58502 194227 ~ 194486 (+) True G456589
TU524245 lncRNA downstream 127157 262882 ~ 263253 (+) True G456689
CI01000321_00098493_00100489.mRNA mRNA upstream 34929 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00150756_00152124.mRNA mRNA downstream 15031 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00283589_00284224.mRNA mRNA downstream 147599 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 190668 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 305657 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 374829 510554 ~ 516356 (+) True CI01000321_00511077_00516356
TU524336 other downstream 290358 426083 ~ 427025 (+) True G456774
TU524456 other downstream 682739 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3653593 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3870901 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3870938 4006663 ~ 4009532 (+) True G459103

Expression Profile