RNA id: TU524125


Basic Information

Item Value
RNA id TU524125
length 412
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G456582
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 176383 ~ 176794 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTGAACACCTGTCTTGCTGGGAGCAGGACATATAACTTAGTAACAGTAGTTAAACTGTAAAGTGCCCACATGACAATCTACCTAACACAGTCCAATGAGCAGTGTACTTGGTAAAAGAACCTTTTTACTCTTTAAAGCAAGAGGAGTACAACATACGCCAACACACACTAAGGAAGGCCTTTGACTGGCCTATGACCTCAGCAGACACGTGGCATCAGCTTGTGGCAGTGTTTAACCATTAGGGTTCTAGGAGCAAAAATAGAACCAACCTAGATACTAGGTAGCTATTTAGCTCGACTAGAGTAGAAACCCAGACTCAAGGAGGCTGATGTAGTTAAAACCAAACCTCAGTAAGGTTTTACCACAAAAACTCACCCTTGAGAGGTCAGCCACCCAGAAGAGTACTCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524115 lncRNA upstream 40658 135515 ~ 135725 (+) True G456573
TU524052 lncRNA upstream 50475 105953 ~ 125908 (+) True G456510
TU524050 lncRNA upstream 85448 85758 ~ 90935 (+) True G456509
TU524081 lncRNA upstream 113822 62358 ~ 62561 (+) True G456539
TU524079 lncRNA upstream 115288 60864 ~ 61095 (+) True G456537
TU524126 lncRNA downstream 1002 177796 ~ 178392 (+) True G456583
TU524132 lncRNA downstream 8838 185632 ~ 186342 (+) True G456588
TU524133 lncRNA downstream 17433 194227 ~ 194486 (+) True G456589
TU524245 lncRNA downstream 86088 262882 ~ 263253 (+) True G456689
TU524247 lncRNA downstream 86789 263583 ~ 263835 (+) True G456691
CI01000321_00150756_00152124.mRNA mRNA upstream 24194 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 75797 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00283589_00284224.mRNA mRNA downstream 106530 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 149599 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 264588 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 333760 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 372301 549095 ~ 550648 (+) True CI01000321_00549095_00550611
TU524336 other downstream 249289 426083 ~ 427025 (+) True G456774
TU524456 other downstream 641670 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3612524 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3829832 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3829869 4006663 ~ 4009532 (+) True G459103

Expression Profile