RNA id: TU524245


Basic Information

Item Value
RNA id TU524245
length 348
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G456689
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 262882 ~ 263253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAATCCACCTCCTGCCACACCAGCCATAACTTCCGCAAACACCACCGTCACTCCTTCTCCTCCGGCATACGCCAGTCCCATGGCCAAACCAGCGCCCTTCTCTGGCTCGGCGGAGGATTGCAACGGCTTCCTACTGCAGTGTTCGCTGTACCCTGATGATCGCTCCAAGGTAGCCTTCATTATCTCTCAACTCAACGGGCGTGCACTCCAGTGGGCTGAAACGATCTGGTCACAAGACGGACCAGTAACCCAGTCGTTGAAAAATTTTGTCACCCACTTCAAGGAGGTTTTCGGCAGACCTGCAAATGATTCATTCAGCCGGTGAGCAGTTATATCATCTAAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524133 lncRNA upstream 68396 194227 ~ 194486 (+) True G456589
TU524132 lncRNA upstream 76540 185632 ~ 186342 (+) True G456588
TU524126 lncRNA upstream 84490 177796 ~ 178392 (+) True G456583
TU524125 lncRNA upstream 86088 176383 ~ 176794 (+) True G456582
TU524115 lncRNA upstream 127157 135515 ~ 135725 (+) True G456573
TU524247 lncRNA downstream 330 263583 ~ 263835 (+) True G456691
TU524268 lncRNA downstream 38540 301793 ~ 302070 (+) True G456711
TU524282 lncRNA downstream 42713 305966 ~ 306223 (+) True G456725
TU524292 lncRNA downstream 52144 315397 ~ 315865 (+) True G456730
TU524313 lncRNA downstream 62172 325425 ~ 325637 (+) True G456751
CI01000321_00150756_00152124.mRNA mRNA upstream 110693 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 162296 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00283589_00284224.mRNA mRNA downstream 20071 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00326486_00355049.mRNA mRNA downstream 63140 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 178129 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 247301 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 285842 549095 ~ 550648 (+) True CI01000321_00549095_00550611
TU524336 other downstream 162830 426083 ~ 427025 (+) True G456774
TU524456 other downstream 555211 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3526065 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3743373 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3743410 4006663 ~ 4009532 (+) True G459103

Expression Profile