RNA id: TU524268


Basic Information

Item Value
RNA id TU524268
length 278
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G456711
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 301793 ~ 302070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAATCCATAAAAGATTTATAAACAATTATGCCGCTATAACTTCATCGTCCGTCTCCGTGCCCGCTGCATTAAACTACCATCTCTGTGAGGGCGGGGGAGATCACGTGAACAAGGTTTCTGGACGCTGATTGGCTCAGGTAAGGCGCTGTGAATGCGTGTACCTCGAAATACAGAGTAGAGAGAGGTTAGGGTGACAAAAAAAAAAAAAAAAAAAACGATGGCTTTTTTTACAATTAAAAATATTACAATCTCACAATTTCATGCACAGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524247 lncRNA upstream 37958 263583 ~ 263835 (+) True G456691
TU524245 lncRNA upstream 38540 262882 ~ 263253 (+) True G456689
TU524133 lncRNA upstream 107307 194227 ~ 194486 (+) True G456589
TU524132 lncRNA upstream 115451 185632 ~ 186342 (+) True G456588
TU524126 lncRNA upstream 123401 177796 ~ 178392 (+) True G456583
TU524282 lncRNA downstream 3896 305966 ~ 306223 (+) True G456725
TU524292 lncRNA downstream 13327 315397 ~ 315865 (+) True G456730
TU524313 lncRNA downstream 23355 325425 ~ 325637 (+) True G456751
TU524321 lncRNA downstream 32198 334268 ~ 334476 (+) True G456759
TU524322 lncRNA downstream 32713 334783 ~ 334993 (+) True G456760
CI01000321_00283589_00284224.mRNA mRNA upstream 17456 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 149604 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 201207 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00326486_00355049.mRNA mRNA downstream 24323 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 139312 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 208484 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 247025 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 257198 559268 ~ 568138 (+) True CI01000321_00559268_00567811
TU524336 other downstream 124013 426083 ~ 427025 (+) True G456774
TU524456 other downstream 516394 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3487248 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3704556 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3704593 4006663 ~ 4009532 (+) True G459103

Expression Profile