RNA id: TU524282


Basic Information

Item Value
RNA id TU524282
length 258
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G456725
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 305966 ~ 306223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCTCCATTCCTCTGTTATGCTACGGTTTCTTTCACTTCCACCTTATCATTTCCTATGTATGCGTGATTTGTGTGTACTGTATGTGTCTGTTAGAGTAGTTATGGGTTTGTGATTTAGTTAAATAAAACTTTTGTGCACATTCTTGTGAGTTGATTCTGATCTGCTTATAAACCAATGTCAATTTAGCAATTATGATCACAACTACATGCTAAGAAAGCATTATTTTTCTGTGGCCATGGAAAATATCCTTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524268 lncRNA upstream 3896 301793 ~ 302070 (+) True G456711
TU524247 lncRNA upstream 42131 263583 ~ 263835 (+) True G456691
TU524245 lncRNA upstream 42713 262882 ~ 263253 (+) True G456689
TU524133 lncRNA upstream 111480 194227 ~ 194486 (+) True G456589
TU524132 lncRNA upstream 119624 185632 ~ 186342 (+) True G456588
TU524292 lncRNA downstream 9174 315397 ~ 315865 (+) True G456730
TU524313 lncRNA downstream 19202 325425 ~ 325637 (+) True G456751
TU524321 lncRNA downstream 28045 334268 ~ 334476 (+) True G456759
TU524322 lncRNA downstream 28560 334783 ~ 334993 (+) True G456760
TU524325 lncRNA downstream 32052 338275 ~ 338501 (+) True G456763
CI01000321_00283589_00284224.mRNA mRNA upstream 21629 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 153777 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 205380 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00326486_00355049.mRNA mRNA downstream 20170 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 135159 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 204331 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 242872 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 253045 559268 ~ 568138 (+) True CI01000321_00559268_00567811
TU524336 other downstream 119860 426083 ~ 427025 (+) True G456774
TU524456 other downstream 512241 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3483095 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3700403 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3700440 4006663 ~ 4009532 (+) True G459103

Expression Profile