RNA id: TU524292


Basic Information

Item Value
RNA id TU524292
length 286
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G456730
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 315397 ~ 315865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCAAACAATCTGATATCACTTGGAAAACTTTATTTGAAAAACAGCTTATTTCAAAACTTAAAAATTTTAAGTTACAACACTTCTTATTTGTTTCTCTTGCTTGGCTTCCTCCTCCTCTTGTTCCTCTTCTTCTTTTTCTTTCTTTCCACTGATGAATCTTAAGAGGGAATCCCATACAAACGGCACATACAGCAATAACTACAGTAATCCATACGACCCCAATGGATGAATCAATGTCTTCTGAAGTGAAATGATACGTATTTGTAAGAAAAATACCAAATATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524282 lncRNA upstream 9174 305966 ~ 306223 (+) True G456725
TU524268 lncRNA upstream 13327 301793 ~ 302070 (+) True G456711
TU524247 lncRNA upstream 51562 263583 ~ 263835 (+) True G456691
TU524245 lncRNA upstream 52144 262882 ~ 263253 (+) True G456689
TU524133 lncRNA upstream 120911 194227 ~ 194486 (+) True G456589
TU524313 lncRNA downstream 9560 325425 ~ 325637 (+) True G456751
TU524321 lncRNA downstream 18403 334268 ~ 334476 (+) True G456759
TU524322 lncRNA downstream 18918 334783 ~ 334993 (+) True G456760
TU524325 lncRNA downstream 22410 338275 ~ 338501 (+) True G456763
TU524342 lncRNA downstream 76327 392192 ~ 392416 (+) True G456780
CI01000321_00283589_00284224.mRNA mRNA upstream 31060 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 163208 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 214811 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00326486_00355049.mRNA mRNA downstream 10528 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00441382_00448773.mRNA mRNA downstream 125517 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 194689 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 233230 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 243403 559268 ~ 568138 (+) True CI01000321_00559268_00567811
TU524336 other downstream 110218 426083 ~ 427025 (+) True G456774
TU524456 other downstream 502599 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3473453 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3690761 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3690798 4006663 ~ 4009532 (+) True G459103

Expression Profile