RNA id: TU524322


Basic Information

Item Value
RNA id TU524322
length 211
lncRNA type intronic
GC content 0.36
exon number 1
gene id G456760
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 334783 ~ 334993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGGGCCCAGTTTCACAGAGAGGGCTTAGCCTAAGCCAAGATTAGACCTTAGTTCAATTAGGATATTTAAGTAGCTTTTATAAACATACACTAGAAAAAAACATTACTGGTGTGCATCTTGAGACAAAACAATGGCTCTGACATATTTTAAGATCTGTCAGTACAAGTTACTTTCAGTTAAAACCGCTCAAACATGCATTTTAGTCTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524321 lncRNA upstream 307 334268 ~ 334476 (+) True G456759
TU524313 lncRNA upstream 9146 325425 ~ 325637 (+) True G456751
TU524292 lncRNA upstream 18918 315397 ~ 315865 (+) True G456730
TU524282 lncRNA upstream 28560 305966 ~ 306223 (+) True G456725
TU524268 lncRNA upstream 32713 301793 ~ 302070 (+) True G456711
TU524325 lncRNA downstream 3282 338275 ~ 338501 (+) True G456763
TU524342 lncRNA downstream 57199 392192 ~ 392416 (+) True G456780
TU524344 lncRNA downstream 61049 396042 ~ 396304 (+) True G456782
TU524337 lncRNA downstream 68379 403372 ~ 403765 (+) True G456775
TU524353 lncRNA downstream 150563 485556 ~ 485862 (+) True G456791
CI01000321_00283589_00284224.mRNA mRNA upstream 50446 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 182594 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 234197 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00441382_00448773.mRNA mRNA downstream 106389 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 175561 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 214102 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 224275 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 314233 649226 ~ 658950 (+) True CI01000321_00649226_00658653
TU524336 other downstream 91090 426083 ~ 427025 (+) True G456774
TU524456 other downstream 483471 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3454325 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3671633 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3671670 4006663 ~ 4009532 (+) True G459103

Expression Profile