RNA id: TU524344


Basic Information

Item Value
RNA id TU524344
length 263
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G456782
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 396042 ~ 396304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGGTGTATGTTTATTAACAACACTAATAAAAGAACAAAGGAACATACAAACAAGAGAAACTAAGGAAACAATATAATCAAAGAATAATGAGGAAAACCGGAACAGGACACAACATCCAGGTAAGCACAACAACCGAAAAAAAACACAAGAAAGTCTGGGGTATATATACACAAGGGGTGATTGGCTAACAAGACACACCTGGGAACAATAAGACTAATTAACTGGGAAAACTACAATGGACTACAAAGATGGCACATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524342 lncRNA upstream 3626 392192 ~ 392416 (+) True G456780
TU524325 lncRNA upstream 57541 338275 ~ 338501 (+) True G456763
TU524322 lncRNA upstream 61049 334783 ~ 334993 (+) True G456760
TU524321 lncRNA upstream 61566 334268 ~ 334476 (+) True G456759
TU524313 lncRNA upstream 70405 325425 ~ 325637 (+) True G456751
TU524337 lncRNA downstream 7068 403372 ~ 403765 (+) True G456775
TU524353 lncRNA downstream 89252 485556 ~ 485862 (+) True G456791
TU524355 lncRNA downstream 90499 486803 ~ 487488 (+) True G456793
TU524357 lncRNA downstream 91653 487957 ~ 488309 (+) True G456795
TU524360 lncRNA downstream 97036 493340 ~ 493807 (+) True G456798
CI01000321_00326486_00355049.mRNA mRNA upstream 40840 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 111705 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 243853 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 295456 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00441382_00448773.mRNA mRNA downstream 45078 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 114250 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 152791 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 162964 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 252922 649226 ~ 658950 (+) True CI01000321_00649226_00658653
TU524336 other downstream 29779 426083 ~ 427025 (+) True G456774
TU524456 other downstream 422160 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3393014 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3610322 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3610359 4006663 ~ 4009532 (+) True G459103

Expression Profile