RNA id: TU524337



Basic Information


Item Value
RNA id TU524337
length 394
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G456775
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 403372 ~ 403765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACTTTATCTGCAGCTAGTACTAACTCCGATAGAAAATCAGCAAATTCTTTGATAAAGTCTGTATGGTGTCCTGGTGGCCTGTATACAGTAGCCAGCACAAATGTCAACTTACATAATGTTACATAAAGTACCATCACTTCGAAGGAATTATATTTGAAAGATTTTTGACTAATACTGTAAATATTACTATAAATTACAGCAACACCTCCCCCTTTGCCTTTCTGACGAGGATTGTGTCGATAATAATAACCTTGAGGGCTAGACTCATTTAAAGTAATGTAATCGTCTGATTTTAGCCAAGTTTCTGTCAAACACAGCAAATCCAGATTATTGTCTGTGATAATATCATTTACAATAAGTGCTTTTGAAGAAAGGGATCTAATATTTAACAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524344 lncRNA upstream 7068 396042 ~ 396304 (+) True G456782
TU524342 lncRNA upstream 10956 392192 ~ 392416 (+) True G456780
TU524325 lncRNA upstream 64871 338275 ~ 338501 (+) True G456763
TU524322 lncRNA upstream 68379 334783 ~ 334993 (+) True G456760
TU524321 lncRNA upstream 68896 334268 ~ 334476 (+) True G456759
TU524353 lncRNA downstream 81791 485556 ~ 485862 (+) True G456791
TU524355 lncRNA downstream 83038 486803 ~ 487488 (+) True G456793
TU524357 lncRNA downstream 84192 487957 ~ 488309 (+) True G456795
TU524360 lncRNA downstream 89575 493340 ~ 493807 (+) True G456798
TU524362 lncRNA downstream 91470 495235 ~ 495481 (+) True G456800
CI01000321_00326486_00355049.mRNA mRNA upstream 48170 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 119035 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 251183 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 302786 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00441382_00448773.mRNA mRNA downstream 37617 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 106789 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 145330 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 155503 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 245461 649226 ~ 658950 (+) True CI01000321_00649226_00658653
TU524336 other downstream 22318 426083 ~ 427025 (+) True G456774
TU524456 other downstream 414699 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3385553 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3602861 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3602898 4006663 ~ 4009532 (+) True G459103

Expression Profile