RNA id: TU524353


Basic Information

Item Value
RNA id TU524353
length 307
lncRNA type intronic
GC content 0.47
exon number 1
gene id G456791
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 485556 ~ 485862 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAATTAGGACCCTGAAGTTCCCTGTAGGTTGGCTAGTATGATTTTTAGAGAGAAAGAAATACCATTTGGGTCTTCTTAGGTGAGAGTGTTGGTTTTTGCTTATTGTATGTTCTCTGGTGAGACCACACTCCTTTGTTTTTCTCTTTATTGGTGAGTAAGCTGGCCTCCTCCCACTTGAGAGTGGTTTTGAGGCCGCTGCTCTGTTGCAGGCTGGCCCTCTTCAGGCCGCCTTGATAGCCACCTCAGGGTAGAGTAGTTTGCCTCCTCTCCTATAGGTTTGGAGGGCTGCTTTTGCAAAGAGACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524337 lncRNA upstream 81791 403372 ~ 403765 (+) True G456775
TU524344 lncRNA upstream 89252 396042 ~ 396304 (+) True G456782
TU524342 lncRNA upstream 93140 392192 ~ 392416 (+) True G456780
TU524325 lncRNA upstream 147055 338275 ~ 338501 (+) True G456763
TU524322 lncRNA upstream 150563 334783 ~ 334993 (+) True G456760
TU524355 lncRNA downstream 941 486803 ~ 487488 (+) True G456793
TU524357 lncRNA downstream 2095 487957 ~ 488309 (+) True G456795
TU524360 lncRNA downstream 7478 493340 ~ 493807 (+) True G456798
TU524362 lncRNA downstream 9373 495235 ~ 495481 (+) True G456800
TU524368 lncRNA downstream 48568 534430 ~ 539694 (+) True G456805
CI01000321_00441382_00448773.mRNA mRNA upstream 36776 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00326486_00355049.mRNA mRNA upstream 130354 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 201219 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 333367 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 384970 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00511077_00516356.mRNA mRNA downstream 24692 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 63233 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 73406 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 163364 649226 ~ 658950 (+) True CI01000321_00649226_00658653
CI01000321_00697882_00700283.mRNA mRNA downstream 211204 697066 ~ 700313 (+) True CI01000321_00697882_00700283
TU524336 other upstream 58531 426083 ~ 427025 (+) True G456774
TU524456 other downstream 332602 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3303456 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3520764 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3520801 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3999535 4485397 ~ 4488552 (+) True G459303

Expression Profile