RNA id: TU524408


Basic Information

Item Value
RNA id TU524408
length 319
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G456842
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 632724 ~ 633919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGCGCGGGACTGTTTTTTTCGTCCCGCTCCCGCAATGGTTCTATTCCGCACGCACCCGCTCCCGCCTAAAATTCACTCTGTGTTCACCCGCTATCCGCATATAGTGATTTTCTTCCCGACCCGACGGGTCCCGCTAAAGATCGTTTCCAGAATCTCGCATTTAAACTTCCCCTAAAGAAAGAGAGTGATTGGGGATAACAAATATAAAATGTTGCATATACAAGATTTGTATTTGTTATTTGTCTATGATGCTGTCAACACCCTAAAAAATGTCAGAGAAAAAATGTCACAAAGAATAATAGGCTAAATATCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524371 lncRNA upstream 87613 544844 ~ 545111 (+) True G456806
TU524368 lncRNA upstream 93030 534430 ~ 539694 (+) True G456805
TU524362 lncRNA upstream 137243 495235 ~ 495481 (+) True G456800
TU524360 lncRNA upstream 138917 493340 ~ 493807 (+) True G456798
TU524357 lncRNA upstream 144415 487957 ~ 488309 (+) True G456795
TU524437 lncRNA downstream 82780 716699 ~ 718214 (+) True G456867
TU524439 lncRNA downstream 101268 735187 ~ 736481 (+) True G456868
TU524490 lncRNA downstream 167741 801660 ~ 801879 (+) True G456911
TU524491 lncRNA downstream 168241 802160 ~ 802388 (+) True G456912
TU524467 lncRNA downstream 246306 880225 ~ 882441 (+) True G456892
CI01000321_00559268_00567811.mRNA mRNA upstream 64586 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00549095_00550611.mRNA mRNA upstream 82076 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00511077_00516356.mRNA mRNA upstream 116368 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00441382_00448773.mRNA mRNA upstream 183944 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00326486_00355049.mRNA mRNA upstream 277522 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00649226_00658653.mRNA mRNA downstream 15307 649226 ~ 658950 (+) True CI01000321_00649226_00658653
CI01000321_00697882_00700283.mRNA mRNA downstream 63147 697066 ~ 700313 (+) True CI01000321_00697882_00700283
CI01000321_00785868_00790038.mRNA mRNA downstream 151949 785868 ~ 791009 (+) True CI01000321_00785868_00790038
CI01000321_00815160_00819665.mRNA mRNA downstream 181241 815160 ~ 819749 (+) False CI01000321_00815160_00819665
CI01000321_00844476_00879488.mRNA mRNA downstream 210375 844294 ~ 879693 (+) True CI01000321_00844476_00879488
TU524336 other upstream 205699 426083 ~ 427025 (+) True G456774
TU524456 other downstream 184545 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3155399 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3372707 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3372744 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3851478 4485397 ~ 4488552 (+) True G459303

Expression Profile