RNA id: TU525913


Basic Information

Item Value
RNA id TU525913
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G458126
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1046446 ~ 1046664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATACACAATAATGATGAACTCAAAGACTAACAGGTGGGATCATTAAATGAGTGTCCTAATGACTGGCAGGAACAAAGGAACACAGGAAACAGATAACTGAAAGTCCAATATGAAAATTAAACCAAAACAGGCAAACATCACAGACTAGGTAAAACTCCACCCATTATGTCCAGAGAATCCAAGAAGTATTTTGGTTTCTAGTAGCAATTTTTAGTAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525833 lncRNA downstream 45550 996819 ~ 1000896 (-) True G458064
TU525825 lncRNA downstream 146339 886796 ~ 900107 (-) True G458059
TU525861 lncRNA downstream 162642 883271 ~ 883804 (-) False G458081
TU525859 lncRNA downstream 162642 883376 ~ 883804 (-) True G458081
TU525860 lncRNA downstream 162758 883271 ~ 883688 (-) False G458081
TU525915 lncRNA upstream 17006 1063670 ~ 1064011 (-) True G458128
TU525923 lncRNA upstream 19538 1066202 ~ 1066558 (-) True G458129
TU525973 lncRNA upstream 150620 1197284 ~ 1197528 (-) True G458166
TU525885 lncRNA upstream 196824 1243488 ~ 1244431 (-) True G458102
TU525984 lncRNA upstream 218847 1265511 ~ 1265768 (-) True G458177
CI01000321_01019890_01027358.mRNA mRNA downstream 19088 1019744 ~ 1027358 (-) True CI01000321_01019890_01027358
CI01000321_00962639_00981042.mRNA mRNA downstream 65227 962230 ~ 981219 (-) True CI01000321_00962639_00981042
CI01000321_00922020_00945388.mRNA mRNA downstream 101058 921501 ~ 945388 (-) True CI01000321_00922020_00945388
CI01000321_00822740_00840482.mRNA mRNA downstream 205964 822456 ~ 840482 (-) True CI01000321_00822740_00840482
CI01000321_00737310_00746720.mRNA mRNA downstream 299726 737209 ~ 746720 (-) True CI01000321_00737310_00746720
CI01000321_01057908_01060166.mRNA mRNA upstream 11066 1057730 ~ 1060497 (-) True CI01000321_01057908_01060166
CI01000321_01090482_01118656.mRNA mRNA upstream 42324 1088988 ~ 1118690 (-) True CI01000321_01090482_01118656
CI01000321_01174323_01177482.mRNA mRNA upstream 126803 1173467 ~ 1179886 (-) True CI01000321_01174323_01177482
CI01000321_01285727_01288625.mRNA mRNA upstream 238928 1285592 ~ 1288625 (-) True CI01000321_01285727_01288625
CI01000321_01290633_01292869.mRNA mRNA upstream 243471 1290135 ~ 1292936 (-) True CI01000321_01290633_01292869
TU525909 other downstream 10298 1032582 ~ 1036148 (-) True G458122
TU525908 other downstream 10721 1032063 ~ 1035725 (-) False G458122
TU524154 other downstream 947251 96116 ~ 99195 (-) True G456607
TU524158 other downstream 1006506 39518 ~ 39940 (-) True G456609
TU524142 other downstream 1019173 25639 ~ 27273 (-) True G456597
TU526071 other upstream 404530 1451194 ~ 1453307 (-) True CI01000321_01451689_01453423
TU526007 other upstream 1226381 2273045 ~ 2281935 (-) False G458199
TU526008 other upstream 1226381 2273045 ~ 2281935 (-) False G458199
TU526009 other upstream 1226381 2273045 ~ 2281935 (-) True G458199
TU526684 other upstream 1941476 2988140 ~ 2988151 (-) True G458794

Expression Profile