RNA id: TU524626


Basic Information

Item Value
RNA id TU524626
length 338
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G457025
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1245299 ~ 1245636 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACACACACACACACACACACACACACACACACACACAGGTTTGTTTTGATATCAAAGTGAGGACATTCCATAGGCGTAATGGTTTTTATACTGTACAAACTGTACATTCTCTCCCCCTACACTACCCCTACCCCTAAACCTACCCATCACAGAAAACATTCTGCATTTTTACATTTTTAATAAAACATTGTTTAGTATGTTTTTAAAGCTATTTTAAATATGAGGACTCATGAAATGTCCTCATATTTCATGTTTAGGTCGTAATACCAGTGTAATACCCATGTTATTATACAAATCTGTGTCTTCAAAATCACACACACACACACACGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524623 lncRNA upstream 66182 1178567 ~ 1179117 (+) True G457022
TU524608 lncRNA upstream 74040 1171018 ~ 1171259 (+) True G457012
TU524620 lncRNA upstream 78749 1166315 ~ 1166550 (+) True G457019
TU524614 lncRNA upstream 84158 1160794 ~ 1161141 (+) False G457018
TU524615 lncRNA upstream 84158 1160803 ~ 1161141 (+) True G457018
TU524634 lncRNA downstream 19907 1265543 ~ 1265757 (+) True G457033
TU524635 lncRNA downstream 20826 1266462 ~ 1266665 (+) True G457034
TU524592 lncRNA downstream 38732 1284368 ~ 1293217 (+) True G457001
TU524588 lncRNA downstream 49830 1295466 ~ 1299847 (+) False G457000
TU524590 lncRNA downstream 51497 1297133 ~ 1298893 (+) False G457000
CI01000321_01242644_01243808.mRNA mRNA upstream 886 1241961 ~ 1244413 (+) True CI01000321_01242644_01243808
CI01000321_01238511_01240051.mRNA mRNA upstream 4973 1238374 ~ 1240326 (+) True CI01000321_01238511_01240051
CI01000321_01227049_01234989.mRNA mRNA upstream 10154 1226351 ~ 1235145 (+) True CI01000321_01227049_01234989
CI01000321_01221875_01223087.mRNA mRNA upstream 21684 1221564 ~ 1223615 (+) True CI01000321_01221875_01223087
CI01000321_01213692_01214996.mRNA mRNA upstream 30043 1213561 ~ 1215256 (+) True CI01000321_01213692_01214996
CI01000321_01342947_01344272.mRNA mRNA downstream 97264 1342900 ~ 1344611 (+) True CI01000321_01342947_01344272
CI01000321_01348009_01350252.mRNA mRNA downstream 102373 1348009 ~ 1351774 (+) True CI01000321_01348009_01350252
CI01000321_01362387_01381302.mRNA mRNA downstream 116751 1362387 ~ 1382657 (+) True CI01000321_01362387_01381302
CI01000321_01411682_01416499.mRNA mRNA downstream 166046 1411682 ~ 1416536 (+) True CI01000321_01411682_01416499
CI01000321_01473475_01476619.mRNA mRNA downstream 227839 1473475 ~ 1477216 (+) True CI01000321_01473475_01476619
TU524456 other upstream 422452 818464 ~ 822847 (+) True G456881
TU524336 other upstream 818274 426083 ~ 427025 (+) True G456774
TU525588 other downstream 2543682 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2760990 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2761027 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3239761 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 3269898 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile