RNA id: TU524586


Basic Information

Item Value
RNA id TU524586
length 295
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G457000
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1295466 ~ 1299847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCCAATGATCCTCTCCGGCTCAAGGTTTCTTGCAAACCCTCTTGGCTTGTCAGACTGCAGCAACATCATTTCCTTCTTTCTTTTTGCCTTGCTCTCCTCTGTTTCTGGTTCATCAGTGGAGGATTTTCTTTTTACAGCTTCTGGTTTTTCCACTACTCCTTTCTGAGACTCCAGGAATGCAGCAATCAGTTCAGGACAGTCTAAATTCTCTTCAGGCTCCCAGGTGTTGTCAGCACTGAAGAAAACATTAGCATATCTTGTTAATCTAATCACATAGCAAGATTTATTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524592 lncRNA upstream 5080 1284368 ~ 1293217 (+) True G457001
TU524635 lncRNA upstream 31632 1266462 ~ 1266665 (+) True G457034
TU524634 lncRNA upstream 32540 1265543 ~ 1265757 (+) True G457033
TU524626 lncRNA upstream 52661 1245299 ~ 1245636 (+) True G457025
TU524623 lncRNA upstream 119180 1178567 ~ 1179117 (+) True G457022
TU524721 lncRNA downstream 87846 1386549 ~ 1386987 (+) True G457104
TU524723 lncRNA downstream 89650 1388353 ~ 1388687 (+) True G457106
TU524724 lncRNA downstream 90029 1388732 ~ 1389229 (+) True G457107
TU524725 lncRNA downstream 90888 1389591 ~ 1390054 (+) True G457108
TU524726 lncRNA downstream 92215 1390918 ~ 1391184 (+) True G457109
CI01000321_01242644_01243808.mRNA mRNA upstream 53884 1241961 ~ 1244413 (+) True CI01000321_01242644_01243808
CI01000321_01238511_01240051.mRNA mRNA upstream 57971 1238374 ~ 1240326 (+) True CI01000321_01238511_01240051
CI01000321_01227049_01234989.mRNA mRNA upstream 63152 1226351 ~ 1235145 (+) True CI01000321_01227049_01234989
CI01000321_01221875_01223087.mRNA mRNA upstream 74682 1221564 ~ 1223615 (+) True CI01000321_01221875_01223087
CI01000321_01213692_01214996.mRNA mRNA upstream 83041 1213561 ~ 1215256 (+) True CI01000321_01213692_01214996
CI01000321_01342947_01344272.mRNA mRNA downstream 44197 1342900 ~ 1344611 (+) True CI01000321_01342947_01344272
CI01000321_01348009_01350252.mRNA mRNA downstream 49306 1348009 ~ 1351774 (+) True CI01000321_01348009_01350252
CI01000321_01362387_01381302.mRNA mRNA downstream 63684 1362387 ~ 1382657 (+) True CI01000321_01362387_01381302
CI01000321_01411682_01416499.mRNA mRNA downstream 112979 1411682 ~ 1416536 (+) True CI01000321_01411682_01416499
CI01000321_01473475_01476619.mRNA mRNA downstream 174772 1473475 ~ 1477216 (+) True CI01000321_01473475_01476619
TU524456 other upstream 475450 818464 ~ 822847 (+) True G456881
TU524336 other upstream 871272 426083 ~ 427025 (+) True G456774
TU525588 other downstream 2490615 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2707923 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2707960 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3186694 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 3216831 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile