RNA id: TU524724



Basic Information


Item Value
RNA id TU524724
length 498
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G457107
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1388732 ~ 1389229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCCACATACCGCCAGACATCCTTGTGGAGGCTCTGTAGAGTTCGTTTGATCAAGGCCTTTGGAACGACAAGCTGCAGTCGGTACTGGCCGTCCTTGCGCTGGATCCGTCGGTACAGCAAGCCCTGGTGGTTGATCACTGTGATCCTGTCGGTCTGGGGTGTGGAAGAGATGATGACGAGTGTGACGTCATCCTGTTGTGTGCTGTTGACTTCCTCACTGGAGAAGGGAAGAACAGAGAAGATGTAGCTGACATCTGGCCCTGATGATGTCTTGGTGCAGTTAATTCCTTGCTCTGTTGTGCTGTCCGTCTGTGAAGGTGTTGAGATGGTGGAACAGTCAGTGGGAAGTGAAGAGGTGTAGATGGTGGAAGGCACAGGGTTGGATGTCTCTGCAGGAGTTGGGACAGTGGCTTCCGGAAGTTTCTTTTCCTTTAGTTGTTTTGCCCACTGTTTGTCTCTCCTCCGAAAGCACTCAACAACCTCTTTTTCTAATGCTGC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524723 lncRNA upstream 45 1388353 ~ 1388687 (+) True G457106
TU524721 lncRNA upstream 1745 1386549 ~ 1386987 (+) True G457104
TU524588 lncRNA upstream 88885 1295466 ~ 1299847 (+) False G457000
TU524725 lncRNA downstream 362 1389591 ~ 1390054 (+) True G457108
TU524726 lncRNA downstream 1689 1390918 ~ 1391184 (+) True G457109
TU524729 lncRNA downstream 4312 1393541 ~ 1393741 (+) True G457112
TU524706 lncRNA downstream 5157 1394386 ~ 1418110 (+) True G457090
TU524740 lncRNA downstream 41000 1430229 ~ 1431421 (+) True G457121
CI01000321_01362387_01381302.mRNA mRNA upstream 6075 1362387 ~ 1382657 (+) True CI01000321_01362387_01381302
CI01000321_01348009_01350252.mRNA mRNA upstream 36958 1348009 ~ 1351774 (+) True CI01000321_01348009_01350252
CI01000321_01342947_01344272.mRNA mRNA upstream 44121 1342900 ~ 1344611 (+) True CI01000321_01342947_01344272
CI01000321_01242644_01243808.mRNA mRNA upstream 144319 1241961 ~ 1244413 (+) True CI01000321_01242644_01243808
CI01000321_01238511_01240051.mRNA mRNA upstream 148406 1238374 ~ 1240326 (+) True CI01000321_01238511_01240051
CI01000321_01411682_01416499.mRNA mRNA downstream 22453 1411682 ~ 1416536 (+) True CI01000321_01411682_01416499
CI01000321_01473475_01476619.mRNA mRNA downstream 84246 1473475 ~ 1477216 (+) True CI01000321_01473475_01476619
CI01000321_01477590_01479280.mRNA mRNA downstream 88361 1477590 ~ 1479280 (+) True CI01000321_01477590_01479280
CI01000321_01480684_01483493.mRNA mRNA downstream 91455 1480684 ~ 1483792 (+) True CI01000321_01480684_01483493
CI01000321_01491101_01521160.mRNA mRNA downstream 101664 1490893 ~ 1521421 (+) True CI01000321_01491101_01521160
TU524456 other upstream 565885 818464 ~ 822847 (+) True G456881
TU524336 other upstream 961707 426083 ~ 427025 (+) True G456774
TU525588 other downstream 2400089 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2617397 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2617434 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3096168 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 3126305 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile