Item | Value |
---|---|
RNA id | TU524724 |
length | 498 |
lncRNA type | inter_gene |
GC content | 0.51 |
exon number | 1 |
gene id | G457107 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000321 |
NCBI id | null |
chromosome length | 5206101 |
location | 1388732 ~ 1389229 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU524723 | lncRNA | upstream | 45 | 1388353 ~ 1388687 (+) | True | G457106 |
TU524721 | lncRNA | upstream | 1745 | 1386549 ~ 1386987 (+) | True | G457104 |
TU524588 | lncRNA | upstream | 88885 | 1295466 ~ 1299847 (+) | False | G457000 |
TU524725 | lncRNA | downstream | 362 | 1389591 ~ 1390054 (+) | True | G457108 |
TU524726 | lncRNA | downstream | 1689 | 1390918 ~ 1391184 (+) | True | G457109 |
TU524729 | lncRNA | downstream | 4312 | 1393541 ~ 1393741 (+) | True | G457112 |
TU524706 | lncRNA | downstream | 5157 | 1394386 ~ 1418110 (+) | True | G457090 |
TU524740 | lncRNA | downstream | 41000 | 1430229 ~ 1431421 (+) | True | G457121 |
CI01000321_01362387_01381302.mRNA | mRNA | upstream | 6075 | 1362387 ~ 1382657 (+) | True | CI01000321_01362387_01381302 |
CI01000321_01348009_01350252.mRNA | mRNA | upstream | 36958 | 1348009 ~ 1351774 (+) | True | CI01000321_01348009_01350252 |
CI01000321_01342947_01344272.mRNA | mRNA | upstream | 44121 | 1342900 ~ 1344611 (+) | True | CI01000321_01342947_01344272 |
CI01000321_01242644_01243808.mRNA | mRNA | upstream | 144319 | 1241961 ~ 1244413 (+) | True | CI01000321_01242644_01243808 |
CI01000321_01238511_01240051.mRNA | mRNA | upstream | 148406 | 1238374 ~ 1240326 (+) | True | CI01000321_01238511_01240051 |
CI01000321_01411682_01416499.mRNA | mRNA | downstream | 22453 | 1411682 ~ 1416536 (+) | True | CI01000321_01411682_01416499 |
CI01000321_01473475_01476619.mRNA | mRNA | downstream | 84246 | 1473475 ~ 1477216 (+) | True | CI01000321_01473475_01476619 |
CI01000321_01477590_01479280.mRNA | mRNA | downstream | 88361 | 1477590 ~ 1479280 (+) | True | CI01000321_01477590_01479280 |
CI01000321_01480684_01483493.mRNA | mRNA | downstream | 91455 | 1480684 ~ 1483792 (+) | True | CI01000321_01480684_01483493 |
CI01000321_01491101_01521160.mRNA | mRNA | downstream | 101664 | 1490893 ~ 1521421 (+) | True | CI01000321_01491101_01521160 |
TU524456 | other | upstream | 565885 | 818464 ~ 822847 (+) | True | G456881 |
TU524336 | other | upstream | 961707 | 426083 ~ 427025 (+) | True | G456774 |
TU525588 | other | downstream | 2400089 | 3789318 ~ 3789972 (+) | True | G457857 |
TU527032 | other | downstream | 2617397 | 4006626 ~ 4009532 (+) | False | G459103 |
TU527033 | other | downstream | 2617434 | 4006663 ~ 4009532 (+) | True | G459103 |
TU527265 | other | downstream | 3096168 | 4485397 ~ 4488552 (+) | True | G459303 |
TU527165 | other | downstream | 3126305 | 4515534 ~ 4518187 (+) | True | CI01000321_04515562_04517953 |