RNA id: TU524729


Basic Information

Item Value
RNA id TU524729
length 201
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G457112
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1393541 ~ 1393741 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAAATGAACCTCCAGTGGCTATGTGGTACAAGTCGGCGCTCTCAGAAAATTTTGTATGTAATTACAAAGAGGAAGTGAATGCTTTTCGGTAATTCCGGCATGGCGTGAACGCACATGGGAGAGAACGGGGATGGTTACAACATGGCATATTCCTTCAATCAGTAACAGTGTTGCTAACTAGTTTTCTGGGAAAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524726 lncRNA upstream 2357 1390918 ~ 1391184 (+) True G457109
TU524725 lncRNA upstream 3487 1389591 ~ 1390054 (+) True G457108
TU524724 lncRNA upstream 4312 1388732 ~ 1389229 (+) True G457107
TU524723 lncRNA upstream 4854 1388353 ~ 1388687 (+) True G457106
TU524721 lncRNA upstream 6554 1386549 ~ 1386987 (+) True G457104
TU524706 lncRNA downstream 645 1394386 ~ 1418110 (+) True G457090
TU524740 lncRNA downstream 36488 1430229 ~ 1431421 (+) True G457121
TU524753 lncRNA downstream 57536 1451277 ~ 1453283 (+) True G457133
TU524759 lncRNA downstream 75602 1469343 ~ 1469544 (+) True G457139
TU524717 lncRNA downstream 91384 1485125 ~ 1486634 (+) True G457100
CI01000321_01362387_01381302.mRNA mRNA upstream 10884 1362387 ~ 1382657 (+) True CI01000321_01362387_01381302
CI01000321_01348009_01350252.mRNA mRNA upstream 41767 1348009 ~ 1351774 (+) True CI01000321_01348009_01350252
CI01000321_01342947_01344272.mRNA mRNA upstream 48930 1342900 ~ 1344611 (+) True CI01000321_01342947_01344272
CI01000321_01242644_01243808.mRNA mRNA upstream 149128 1241961 ~ 1244413 (+) True CI01000321_01242644_01243808
CI01000321_01238511_01240051.mRNA mRNA upstream 153215 1238374 ~ 1240326 (+) True CI01000321_01238511_01240051
CI01000321_01411682_01416499.mRNA mRNA downstream 17941 1411682 ~ 1416536 (+) True CI01000321_01411682_01416499
CI01000321_01473475_01476619.mRNA mRNA downstream 79734 1473475 ~ 1477216 (+) True CI01000321_01473475_01476619
CI01000321_01477590_01479280.mRNA mRNA downstream 83849 1477590 ~ 1479280 (+) True CI01000321_01477590_01479280
CI01000321_01480684_01483493.mRNA mRNA downstream 86943 1480684 ~ 1483792 (+) True CI01000321_01480684_01483493
CI01000321_01491101_01521160.mRNA mRNA downstream 97152 1490893 ~ 1521421 (+) True CI01000321_01491101_01521160
TU524456 other upstream 570694 818464 ~ 822847 (+) True G456881
TU524336 other upstream 966516 426083 ~ 427025 (+) True G456774
TU525588 other downstream 2395577 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2612885 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2612922 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 3091656 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 3121793 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile