RNA id: TU524872


Basic Information

Item Value
RNA id TU524872
length 437
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G457245
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1927175 ~ 1927611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCTGTACGTCACTTTAGTCGTCTTTACTTTGATTGCAATCCTCATCCATCAAAACTTTCATAGCAAGATGGTGGTTTGCTTTATCCAGCCGAGAAACAGTTTTCATATCATCTGGCCATACAGCGGTGGGATGTTTCGACATTCCGTTCGAACAGGAACAGCGCGATGCGGGAGGGCTCACGCTCTTTAGATACAATGACACAATGTGACAGAGAGTTTGTTTTAAAGCGAAACAGACACTGGAATGAATAATTCTCTCTGCCATCTCTGATATAACCAGCATGGACTTTAAGATAATCTAACTGCGTGACGTAAATTACGTTATGACGCAATTTCACATGCTTCTGTATTTTTTTTGCGTTAAATATGCGTTAAATTATTTTAACGCGTTAAGGATTTTGAATTAATCACATGCGTTAACGCGTTAACGTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524815 lncRNA upstream 105673 1821141 ~ 1821502 (+) True G457191
TU524807 lncRNA upstream 115507 1811417 ~ 1811668 (+) True G457183
TU524782 lncRNA upstream 307845 1618903 ~ 1619330 (+) True G457160
TU524717 lncRNA upstream 440541 1485125 ~ 1486634 (+) True G457100
TU524759 lncRNA upstream 457631 1469343 ~ 1469544 (+) True G457139
TU524880 lncRNA downstream 6121 1933732 ~ 1933968 (+) True G457253
TU524882 lncRNA downstream 14307 1941918 ~ 1942125 (+) True G457255
TU524890 lncRNA downstream 24748 1952359 ~ 1952619 (+) True G457262
TU524898 lncRNA downstream 33846 1961457 ~ 1961750 (+) True G457269
TU524911 lncRNA downstream 45387 1972998 ~ 1973207 (+) True G457282
CI01000321_01789650_01796167.mRNA mRNA upstream 130658 1789304 ~ 1796517 (+) True CI01000321_01789650_01796167
CI01000321_01778626_01782120.mRNA mRNA upstream 144840 1778626 ~ 1782335 (+) True CI01000321_01778626_01782120
CI01000321_01773447_01776531.mRNA mRNA upstream 150631 1773072 ~ 1776544 (+) True CI01000321_01773447_01776531
CI01000321_01767234_01768560.mRNA mRNA upstream 158408 1767234 ~ 1768767 (+) True CI01000321_01767234_01768560
CI01000321_01741333_01755566.mRNA mRNA upstream 170817 1741221 ~ 1756358 (+) True CI01000321_01741333_01755566
CI01000321_02060877_02067096.mRNA mRNA downstream 133266 2060877 ~ 2067521 (+) True CI01000321_02060877_02067096
CI01000321_02069556_02082569.mRNA mRNA downstream 141643 2069254 ~ 2083342 (+) True CI01000321_02069556_02082569
CI01000321_02205260_02210288.mRNA mRNA downstream 276906 2204517 ~ 2210526 (+) True CI01000321_02205260_02210288
CI01000321_02306311_02308161.mRNA mRNA downstream 378510 2306121 ~ 2308202 (+) True CI01000321_02306311_02308161
CI01000321_02359797_02366314.mRNA mRNA downstream 432186 2359797 ~ 2366359 (+) True CI01000321_02359797_02366314
TU524456 other upstream 1104328 818464 ~ 822847 (+) True G456881
TU524336 other upstream 1500150 426083 ~ 427025 (+) True G456774
TU525588 other downstream 1861707 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2079015 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2079052 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 2557786 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 2587923 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile