RNA id: TU524911


Basic Information

Item Value
RNA id TU524911
length 210
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G457282
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1972998 ~ 1973207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAATAAAGTAATGTAGCATCATTAACAACTAACATGAACTAACAATAACAAATGGGTAAAATCATCTCAAATCAAATCGTTCTGAATTTGCAAAAATCGTTCTTGAATCGAAAACCTGTCAATCGTGAAACAAATCGATTCGGCCAAAGATTCATAGCCCTAATTTGTTGACATAAGCAAATTGCAGAAAAGATAGAAGAAACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524898 lncRNA upstream 11248 1961457 ~ 1961750 (+) True G457269
TU524890 lncRNA upstream 20379 1952359 ~ 1952619 (+) True G457262
TU524882 lncRNA upstream 30873 1941918 ~ 1942125 (+) True G457255
TU524880 lncRNA upstream 39030 1933732 ~ 1933968 (+) True G457253
TU524872 lncRNA upstream 45387 1927175 ~ 1927611 (+) True G457245
TU525025 lncRNA downstream 52091 2025298 ~ 2025509 (+) True G457372
TU524960 lncRNA downstream 57048 2030255 ~ 2043102 (+) True G457307
TU525029 lncRNA downstream 133799 2107006 ~ 2107463 (+) True G457376
TU525047 lncRNA downstream 186770 2159977 ~ 2160736 (+) True G457394
TU524985 lncRNA downstream 206582 2179789 ~ 2181161 (+) True G457332
CI01000321_01789650_01796167.mRNA mRNA upstream 176481 1789304 ~ 1796517 (+) True CI01000321_01789650_01796167
CI01000321_01778626_01782120.mRNA mRNA upstream 190663 1778626 ~ 1782335 (+) True CI01000321_01778626_01782120
CI01000321_01773447_01776531.mRNA mRNA upstream 196454 1773072 ~ 1776544 (+) True CI01000321_01773447_01776531
CI01000321_01767234_01768560.mRNA mRNA upstream 204231 1767234 ~ 1768767 (+) True CI01000321_01767234_01768560
CI01000321_01741333_01755566.mRNA mRNA upstream 216640 1741221 ~ 1756358 (+) True CI01000321_01741333_01755566
CI01000321_02060877_02067096.mRNA mRNA downstream 87670 2060877 ~ 2067521 (+) True CI01000321_02060877_02067096
CI01000321_02069556_02082569.mRNA mRNA downstream 96047 2069254 ~ 2083342 (+) True CI01000321_02069556_02082569
CI01000321_02205260_02210288.mRNA mRNA downstream 231310 2204517 ~ 2210526 (+) True CI01000321_02205260_02210288
CI01000321_02306311_02308161.mRNA mRNA downstream 332914 2306121 ~ 2308202 (+) True CI01000321_02306311_02308161
CI01000321_02359797_02366314.mRNA mRNA downstream 386590 2359797 ~ 2366359 (+) True CI01000321_02359797_02366314
TU524456 other upstream 1150151 818464 ~ 822847 (+) True G456881
TU524336 other upstream 1545973 426083 ~ 427025 (+) True G456774
TU525588 other downstream 1816111 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 2033419 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 2033456 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 2512190 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 2542327 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile