RNA id: TU525025


Basic Information

Item Value
RNA id TU525025
length 212
lncRNA type intronic
GC content 0.33
exon number 1
gene id G457372
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2025298 ~ 2025509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAAATGGTTACATCTTAATAATTATGGTTCAGAAGTAAGAAAGAATCAAATGTTTCTTTTTTCATTCCGGTAGTGTTCGAAATTGTTCACCATCTTCGTTTTTTCCAGTGTGAAAAGACCTGGGGAGCAAACAAACAAACTAATAAATAAATAAAAACTGACAGAACTGCGCTGCTATATTATTTAATGACAAGATCTAGAAAGAGGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524911 lncRNA upstream 52091 1972998 ~ 1973207 (+) True G457282
TU524898 lncRNA upstream 63548 1961457 ~ 1961750 (+) True G457269
TU524890 lncRNA upstream 72679 1952359 ~ 1952619 (+) True G457262
TU524882 lncRNA upstream 83173 1941918 ~ 1942125 (+) True G457255
TU524880 lncRNA upstream 91330 1933732 ~ 1933968 (+) True G457253
TU524960 lncRNA downstream 4746 2030255 ~ 2043102 (+) True G457307
TU525029 lncRNA downstream 81497 2107006 ~ 2107463 (+) True G457376
TU525047 lncRNA downstream 134468 2159977 ~ 2160736 (+) True G457394
TU524985 lncRNA downstream 154280 2179789 ~ 2181161 (+) True G457332
TU525049 lncRNA downstream 166697 2192206 ~ 2192616 (+) True G457396
CI01000321_01789650_01796167.mRNA mRNA upstream 228781 1789304 ~ 1796517 (+) True CI01000321_01789650_01796167
CI01000321_01778626_01782120.mRNA mRNA upstream 242963 1778626 ~ 1782335 (+) True CI01000321_01778626_01782120
CI01000321_01773447_01776531.mRNA mRNA upstream 248754 1773072 ~ 1776544 (+) True CI01000321_01773447_01776531
CI01000321_01767234_01768560.mRNA mRNA upstream 256531 1767234 ~ 1768767 (+) True CI01000321_01767234_01768560
CI01000321_01741333_01755566.mRNA mRNA upstream 268940 1741221 ~ 1756358 (+) True CI01000321_01741333_01755566
CI01000321_02060877_02067096.mRNA mRNA downstream 35368 2060877 ~ 2067521 (+) True CI01000321_02060877_02067096
CI01000321_02069556_02082569.mRNA mRNA downstream 43745 2069254 ~ 2083342 (+) True CI01000321_02069556_02082569
CI01000321_02205260_02210288.mRNA mRNA downstream 179008 2204517 ~ 2210526 (+) True CI01000321_02205260_02210288
CI01000321_02306311_02308161.mRNA mRNA downstream 280612 2306121 ~ 2308202 (+) True CI01000321_02306311_02308161
CI01000321_02359797_02366314.mRNA mRNA downstream 334288 2359797 ~ 2366359 (+) True CI01000321_02359797_02366314
TU524456 other upstream 1202451 818464 ~ 822847 (+) True G456881
TU524336 other upstream 1598273 426083 ~ 427025 (+) True G456774
TU525588 other downstream 1763809 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 1981117 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 1981154 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 2459888 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 2490025 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile