RNA id: TU525099


Basic Information

Item Value
RNA id TU525099
length 363
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G457440
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2320005 ~ 2320367 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATTAGATAATAAGATTAAACGTGTTGAGCTATATAACATTAATTAGTTTTCTGTCTATAAATGTAACCAAACAGTTGTTCCCTTGTCTATTAAAACATGTAATATATTAAAGCGTCTTTGGTGTTTCCATGGTTTCTACAAAATAAAACCGGAAACCGAGGGTAATGCGGGTATGACGCAATTGACAGGCGACTCCTCACATGTCCCGGAGCCTTGGTTAAAATTGCAATTTTCTCACGATTTACAAATAGTTGGAAACATTTGGGATATTGTAAGTACTCAAGTGAACAAAATATATAACACTGGCCTAGTGGTTTTTGGATATTTTACTGCAAAATTCTTACATATTGCACCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525098 lncRNA upstream 350 2319408 ~ 2319655 (+) True G457439
TU525090 lncRNA upstream 22272 2297494 ~ 2297733 (+) True G457431
TU524950 lncRNA upstream 35487 2272800 ~ 2284518 (+) False G457306
TU525120 lncRNA downstream 106553 2426920 ~ 2427188 (+) True G457460
TU525131 lncRNA downstream 165049 2485416 ~ 2485637 (+) True G457471
TU525133 lncRNA downstream 166534 2486901 ~ 2487500 (+) True G457473
TU525134 lncRNA downstream 167468 2487835 ~ 2489055 (+) True G457474
TU525137 lncRNA downstream 171852 2492219 ~ 2492553 (+) True G457477
CI01000321_02306311_02308161.mRNA mRNA upstream 11803 2306121 ~ 2308202 (+) True CI01000321_02306311_02308161
CI01000321_02205260_02210288.mRNA mRNA upstream 109479 2204517 ~ 2210526 (+) True CI01000321_02205260_02210288
CI01000321_02069556_02082569.mRNA mRNA upstream 236663 2069254 ~ 2083342 (+) True CI01000321_02069556_02082569
CI01000321_02060877_02067096.mRNA mRNA upstream 252484 2060877 ~ 2067521 (+) True CI01000321_02060877_02067096
CI01000321_01789650_01796167.mRNA mRNA upstream 523488 1789304 ~ 1796517 (+) True CI01000321_01789650_01796167
CI01000321_02359797_02366314.mRNA mRNA downstream 39430 2359797 ~ 2366359 (+) True CI01000321_02359797_02366314
CI01000321_02371786_02421055.mRNA mRNA downstream 51294 2371661 ~ 2421699 (+) True CI01000321_02371786_02421055
CI01000321_02433523_02469055.mRNA mRNA downstream 113156 2433523 ~ 2469069 (+) True CI01000321_02433523_02469055
CI01000321_02508568_02513821.mRNA mRNA downstream 188201 2508568 ~ 2513907 (+) True CI01000321_02508568_02513821
CI01000321_02515869_02522379.mRNA mRNA downstream 194979 2515346 ~ 2522484 (+) True CI01000321_02515869_02522379
TU524456 other upstream 1497158 818464 ~ 822847 (+) True G456881
TU524336 other upstream 1892980 426083 ~ 427025 (+) True G456774
TU525588 other downstream 1468951 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 1686259 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 1686296 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 2165030 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 2195167 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile