RNA id: TU526606


Basic Information

Item Value
RNA id TU526606
length 1598
lncRNA type antisense_over
GC content 0.42
exon number 7
gene id G458752
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2887067 ~ 2890372 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAGGGACAGAAATCTCTCAGATTTCATTAAAATATTGAAGGGGGAGATTCTGGAATCCACTGCCGCTTCTATGAATATCCTTTGCGTGAATTGTAAAGAGCGATTTATAAACAGTGAATTAATCAATATGTGAAAGTATGGAGGGCGGCCTACAAACTCCTTTTGAGTGTTGAAGTTGACGTCTGCTGATAAAACTGCAAAATATCTTTTTCTTCAATTTATTTTTTTAGCTCAGACTCTGGGTCTTCATTCATCATATCTGGTCATTGGGTCTTTAACTGCAAATTCTCCTACAATATCTTCATTTGTGTTCTGAAGATGAGCAAGTCTTATGGGTTTGGAACAACATGAGGGTGAGTAATTGATGACAGAATTTAAATTTTTGGGTGAACTATACCTTTAACTATGCAATTATGTACACACAATCTGCAGGAAACAATTCAGAGATATAGCAATAAACTCAAATGTCAAAGACAGATCTTATGGCAAGCAAATATTCTGTTGTCAATTGTCACATCAGAGAAATTAGGAAGTTCCAGCACTTCAAGACTCATTGTAGAATGAGTTCCATTTTAACTTACCTTCAGAAAGCCTATTTCAAACAGTGGGACACCAAAGCCACAGTTGTAAGGTGTCGCAGTGATCTCATAGCTGACTTGTGAAGCATTTGCTTGTTTGCTCACAATTATGTTTGACAAGAAAAGTCCAGAACTGGCTAGAGCAGGTGGTCTTCTTCCGTGGATTATGACATTAGAATCTAAAGCAGTCGTTGCACGTCCAATGTGAACAGCGTCTATGAAGTAAACAGAGTTAGCAGCCTCTCCATACACACTGAACTGAAGAAGTTTGTAGTTGGAGCCAATGTAGTTTGTCTGTATGGAGCTCAAGAGATCCACACACTTGTAGTTCCACTCATCTGTTGAGTCAAATTGCACAGAGATGCGTATGTTCTCCTCCCGGTAAGTATTTGCAGTTATGTAACTGAACAATATTCCCAGTTCATTCACCAGACGCCCTTTGTAGGCCAAGCAGAGAGTGTTGTATGTTTGTAGCAGTATTGGGCTGTAGATCACTCCGGATGCTGTAGTGTCATTGGCATTGAAGAGAATCTCTGGATTCTTTAGAGACCAACGGCCACAGAAAGCCTCAGAATCAGTGACCCGAACCCCTCTGCGGCTTAGATCACCTGAAAACCCTGTGGTGTTGGTCTCATAATCTCTGAAAAATTTCACATTAGTGTTCTCCATGGTCGGAATCTCTGCTGGACATTTAGCGGTGACCATCATATCTAGTGCTGAACGCACCTCAGTTTCAGAAGCATTGAAAGGCAGAGGGAGGGACGGAACTCCACCCCACAGCAGTGTGAACGTCTCCATGCTGGCCTGGCCTTTCATGTCCTCAGTAACTGTGATGTTTGTATCTGAGCCCATGATCAAGTAGTCAAGATCCTCAAAGTCACCTCTGTTAGAGTTGAATGTGACATTATACAGTGCCTCATTGTCCAGTTCTTGCTTTGTGACTGTAACACTGTCCGGTTTTATCGTCCACAAATCATTCAGAGCATTCTGCAACTCCATCGCTGATGCACTAACTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526530 lncRNA downstream 162378 2722036 ~ 2724689 (-) True G458687
TU526529 lncRNA downstream 165621 2720138 ~ 2721446 (-) True G458686
TU526525 lncRNA downstream 171673 2715107 ~ 2715394 (-) True G458682
TU526515 lncRNA downstream 181411 2705401 ~ 2705656 (-) True G458672
TU526482 lncRNA downstream 217040 2669644 ~ 2670027 (-) True G458651
TU526614 lncRNA upstream 3434 2893806 ~ 2894742 (-) True G458756
TU526643 lncRNA upstream 62695 2953067 ~ 2953908 (-) True G458777
TU526708 lncRNA upstream 161400 3051772 ~ 3052354 (-) True G458814
TU526714 lncRNA upstream 240775 3131147 ~ 3131363 (-) True G458820
TU526715 lncRNA upstream 244048 3134420 ~ 3134629 (-) True G458821
CI01000321_02739755_02767802.mRNA mRNA downstream 119099 2739482 ~ 2767968 (-) True CI01000321_02739755_02767802
CI01000321_02702079_02702974.mRNA mRNA downstream 184093 2701859 ~ 2702974 (-) True CI01000321_02702079_02702974
CI01000321_02671166_02689684.mRNA mRNA downstream 197325 2670522 ~ 2689742 (-) True CI01000321_02671166_02689684
CI01000321_02656580_02666438.mRNA mRNA downstream 220629 2656571 ~ 2666438 (-) True CI01000321_02656580_02666438
CI01000321_02606321_02610175.mRNA mRNA downstream 276502 2605975 ~ 2610565 (-) True CI01000321_02606321_02610175
CI01000321_03028470_03033496.mRNA mRNA upstream 138025 3028397 ~ 3034891 (-) True CI01000321_03028470_03033496
CI01000321_03044953_03048124.mRNA mRNA upstream 154508 3044880 ~ 3048124 (-) False CI01000321_03044953_03048124
CI01000321_03067511_03106086.mRNA mRNA upstream 176368 3066740 ~ 3106086 (-) True CI01000321_03067511_03106086
CI01000321_03196013_03203541.mRNA mRNA upstream 305578 3195950 ~ 3203688 (-) True CI01000321_03196013_03203541
CI01000321_03319309_03319938.mRNA mRNA upstream 428231 3318603 ~ 3321335 (-) True CI01000321_03319309_03319938
TU526007 other downstream 602556 2273045 ~ 2281935 (-) False G458199
TU526008 other downstream 602556 2273045 ~ 2281935 (-) False G458199
TU526009 other downstream 602556 2273045 ~ 2281935 (-) True G458199
TU526071 other downstream 1433760 1451194 ~ 1453307 (-) True CI01000321_01451689_01453423
TU525909 other downstream 1850919 1032582 ~ 1036148 (-) True G458122
TU526684 other upstream 97768 2988140 ~ 2988151 (-) True G458794
TU526683 other upstream 129064 3019436 ~ 3019945 (-) True G458794
TU526693 other upstream 197743 3088115 ~ 3091927 (-) True G458802
TU526761 other upstream 581509 3471881 ~ 3489534 (-) True G458859
TU526870 other upstream 771254 3661626 ~ 3666999 (-) True G458957

Expression Profile