RNA id: TU525590



Basic Information


Item Value
RNA id TU525590
length 1373
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G457859
representative True

Chromosome Information


Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3692881 ~ 3696205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTGGAAGACTATGGTACAAACTTTTTACATTTTTGTAAGGACAATAAATCAGCAAACTGTTGGACCTGGAGCCGAGGGACTTGATATCTGGTAACAGACAAAATGAGAAATCATATACATTTGAAATAGCAAATCCCAATTCAAATAACATTGGACCTCCATAAACAGTAATATGTTTGTATTTGTTTCCACGCTAAAAGCTAGGCTAGGCAGAAAGCATTTTAGCACGTCAATATTTTTCATAGACTGGTATGGCAAACGCTAATATTTTTGAGAATCATATTTGACAGAGATTATTAAAGAAAAATCACATGTGAAGCATTGTGCATTGTAGCTCTTTTGTATATTTTATTTTAGTTTAACACATAAATGACTCTGTTACTCTGATCTGTTACTCAAGTAAATGACAATATGGATATGTAATGGATATCTAGACATAATCCCTATATTTGAGGGACATAATTTTTCTACATTGTGGCCTTCAATCAATATTTTTGTATATTTATACTGTACATGTTTTATATATTCTTATGATATACAAGATGTTAAGCTCTTGACGTTTCCAGGCCTCATTTAAATTCTACACTTTCAATCCATCTCTGCCTTTTTAAACACTCAAACACACACACATATTCACTCCTCCAAAACCAAAGACGAACACATACAAGTTATGATAACAAAGTGGACACATCCAACACCTTGTGGACAAATGTAAAGATACTGAAACAGTCTTCAAAAAAACGTTACCATAAAGTTTCACATATTACGCTCATGGGATGTTCCTCTCCTTTTATACAATCTTTTTCATAACTTCATTTGGTTGATTTGTTTTAGAAGACCAACAAAACCCTTAATAGCCTATTTCTCACCTCTGTGCTCTGCTAAGATTAGCAGCTTTACATACAGCTTGCCTCTAATGTTCCATGCTATTATGCAGTATCTTTTAATTGCAGTAGTTCTGATGAAGGAATGGGAACAATAATGGAATGAAGGATGATGAAACTTTTTCAGAACTGGACCCAGTTCCCAGAAGAGGGTTCTTGGTGAGATGCTGGAGGAGGAACAGAGCTGTCAGAGCTGGGGTTTGACTGAACCACTGTATTAGAGTTACTGCTGTCCAGTTCTAATAAACATCCTAAGAGTAGGGGGAAAACCGGGAGATGAAGAAAAAAAAAAAAGAGAGAGAAAAACAAAGGTTATCAAGATATCTGTAAAATGTATTTGTGTGTTTGTCTGTATATGTCTGTGCATTTAGAGTGGGTGAGATATTAATAAAAATGAATTGTCAGACTCAGAATTCATATTTTACATAATTCATATATGGTTACGACACTGATGACGATGTAAATTGAAAAGCTATCTTTGGATTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU525569 lncRNA upstream 57401 3631777 ~ 3635480 (+) True G457842
TU525512 lncRNA upstream 120754 3517093 ~ 3572127 (+) False G457797
TU525603 lncRNA downstream 26544 3722749 ~ 3732110 (+) True G457872
TU525606 lncRNA downstream 40241 3736446 ~ 3738593 (+) True G457874
TU525592 lncRNA downstream 106801 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525610 lncRNA downstream 142102 3838307 ~ 3838532 (+) True G457878
TU527061 lncRNA downstream 402816 4099021 ~ 4102339 (+) True G459126
CI01000321_03680978_03683234.mRNA mRNA upstream 9202 3680978 ~ 3683679 (+) True CI01000321_03680978_03683234
CI01000321_03674424_03676748.mRNA mRNA upstream 15877 3674424 ~ 3677004 (+) True CI01000321_03674424_03676748
CI01000321_03650761_03655489.mRNA mRNA upstream 37372 3649366 ~ 3655509 (+) True CI01000321_03650761_03655489
CI01000321_03597314_03599713.mRNA mRNA upstream 92919 3596346 ~ 3599962 (+) True CI01000321_03597314_03599713
CI01000321_03561216_03562202.mRNA mRNA upstream 130589 3558614 ~ 3562292 (+) True CI01000321_03561216_03562202
CI01000321_03702229_03709660.mRNA mRNA downstream 5883 3702088 ~ 3709808 (+) True CI01000321_03702229_03709660
CI01000321_03714795_03718845.mRNA mRNA downstream 18271 3714476 ~ 3719085 (+) True CI01000321_03714795_03718845
CI01000321_03739229_03740955.mRNA mRNA downstream 43024 3739229 ~ 3740990 (+) True CI01000321_03739229_03740955
CI01000321_03749658_03759359.mRNA mRNA downstream 53453 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
CI01000321_03767896_03783640.mRNA mRNA downstream 71691 3767896 ~ 3783926 (+) True CI01000321_03767896_03783640
TU524456 other upstream 2870034 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3265856 426083 ~ 427025 (+) True G456774
TU525588 other downstream 93113 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 310421 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 310458 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 789192 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 819329 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile